1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:6.94e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P9F13_RS01395
Response regulator OmpR family
Alkalihalophilus marmarensis · GCF_035812635
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_035812635#P9F13_RS01395Stable P2CS identifier used across views.
GenomeGCF_035812635Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 235 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-231 aa · 72 aa · 30.6% of protein
Raw token
Trans_reg_C:160:2.24e-31:231:75:77- Raw architecture: Response_reg:4:6.94e-37:113:111:111#Trans_reg_C:160:2.24e-31:231:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_035812635::NZ_JARSOQ010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span237270-239395Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP9F13_01395RefSeq proteinWP_326238021.1
Context group ID
GCF_035812635::NZ_JARSOQ010000001.1::G00002Context members
P9F13_RS01390P9F13_RS01395
Partner locus tags
P9F13_RS01390P9F13_RS01395
Partner old locus tags
P9F13_01390P9F13_01395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_326238021.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP9F13_RS01395Primary locus identifier stored in the genes table.
Old locus tagP9F13_01395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARSOQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval238 688-239 395 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span237 270-239 395 ntGCF_035812635::NZ_JARSOQ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035812635::NZ_JARSOQ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARSOQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span237 270-239 395 nt2 126 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
237 270 nt239 395 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P9F13_RS01390GCF_035812635#P9F13_RS01390
HKClassic
237 270-238 691 nt · Reverse (-)
P9F13_RS01395GCF_035812635#P9F13_RS01395
RROmpRCurrent focus
238 688-239 395 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035812635#P9F13_RS01395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1037591
Simplified PFAM architecture for RROC_1037591
PFAM domain coverage: 182 / 235 aa (77.4%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[160-231]
- Domain count: 2
- Matched identifier: RROC_1037591
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 160-231
Cluster members and taxonomy
Representative gene: GCF_035812635#P9F13_RS01395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_035812635
AssemblyASM3581263v1 · Scaffoldhaploid
Genome composition4 162 042 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 66 · HK 34 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key