1 HAMP#1
169-238 aa · 70 aa · 14.8% of protein
Raw token
HAMP:169:9.14e-16:238:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P9F13_RS01390
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_035812635
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_035812635#P9F13_RS01390Stable P2CS identifier used across views.
GenomeGCF_035812635Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 473 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation3 items
2 HisKA#2
242-308 aa · 67 aa · 14.2% of protein
Raw token
HisKA:242:8.75e-21:308:67:643 HATPase_c#3
354-463 aa · 110 aa · 23.3% of protein
Raw token
HATPase_c:354:1.3e-28:463:110:109- Raw architecture: HAMP:169:9.14e-16:238:70:69#HisKA:242:8.75e-21:308:67:64#HATPase_c:354:1.3e-28:463:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_035812635::NZ_JARSOQ010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span237270-239395Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP9F13_01390RefSeq proteinWP_326238020.1
Context group ID
GCF_035812635::NZ_JARSOQ010000001.1::G00002Context members
P9F13_RS01390P9F13_RS01395
Partner locus tags
P9F13_RS01390P9F13_RS01395
Partner old locus tags
P9F13_01390P9F13_01395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_326238020.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP9F13_RS01390Primary locus identifier stored in the genes table.
Old locus tagP9F13_01390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARSOQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval237 270-238 691 nt1 422 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span237 270-239 395 ntGCF_035812635::NZ_JARSOQ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035812635::NZ_JARSOQ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARSOQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span237 270-239 395 nt2 126 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
237 270 nt239 395 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P9F13_RS01390GCF_035812635#P9F13_RS01390
HKClassicCurrent focus
237 270-238 691 nt · Reverse (-)
P9F13_RS01395GCF_035812635#P9F13_RS01395
RROmpR
238 688-239 395 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035812635#P9F13_RS01390The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1693492
Simplified PFAM architecture for HKOC_1693492
PFAM domain coverage: 226 / 473 aa (47.8%)
1 aa473 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[188-237] | HisKA[243-307] | HATPase_c[354-464]
- Domain count: 3
- Matched identifier: HKOC_1693492
- Positioned domains: HAMP 188-237 ; HisKA 243-307 ; HATPase_c 354-464
Cluster members and taxonomy
Representative gene: GCF_035812635#P9F13_RS01390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_035812635
AssemblyASM3581263v1 · Scaffoldhaploid
Genome composition4 162 042 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 66 · HK 34 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key