1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.00000000000000873:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GJS84_RS02410
Histidine kinase, Classic
Bifidobacterium breve · GCF_035544755
ClassHKTypeClassicLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_035544755#GJS84_RS02410Stable P2CS identifier used across views.
GenomeGCF_035544755Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 451 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.000000000802:443:120:109- Raw architecture: HisKA_3:215:0.00000000000000873:278:64:68#HATPase_c:325:0.000000000802:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_035544755::NZ_JAYKXM010000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83868-85873Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGJS84_02410RefSeq proteinWP_324621077.1
Context group ID
GCF_035544755::NZ_JAYKXM010000002.1::G00005Context members
GJS84_RS02410GJS84_RS02415
Partner locus tags
GJS84_RS02410GJS84_RS02415
Partner old locus tags
GJS84_02410GJS84_02415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_324621077.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGJS84_RS02410Primary locus identifier stored in the genes table.
Old locus tagGJS84_02410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAYKXM010000002.1Sequence record reported by the local genomic context database.
Genomic interval83 868-85 223 nt1 356 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 868-85 873 ntGCF_035544755::NZ_JAYKXM010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035544755::NZ_JAYKXM010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAYKXM010000002.1All displayed genes belong to this local TCS context.
Neighborhood span83 868-85 873 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 868 nt85 873 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GJS84_RS02410GCF_035544755#GJS84_RS02410
HKClassicCurrent focus
83 868-85 223 nt · Forward (+)
GJS84_RS02415GCF_035544755#GJS84_RS02415
RRNarL
85 220-85 873 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035544755#GJS84_RS02410The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1957896
Simplified PFAM architecture for HKOC_1957896
PFAM domain coverage: 185 / 451 aa (41.0%)
1 aa451 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[215-280] | HATPase_c[323-441]
- Domain count: 2
- Matched identifier: HKOC_1957896
- Positioned domains: HisKA_3 215-280 ; HATPase_c 323-441
Cluster members and taxonomy
Representative gene: GCF_035544755#GJS84_RS02410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_035544755
AssemblyASM3554475v1 · Contighaploid
Genome composition2 159 807 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 17 · HK 8 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key