1 HisKA#1
309-375 aa · 67 aa · 12.6% of protein
Raw token
HisKA:309:0.0000000000000133:375:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SRA80_RS01225
Histidine kinase, Classic
Clostridioides difficile · GCF_034188625
ClassHKTypeClassicLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034188625#SRA80_RS01225Stable P2CS identifier used across views.
GenomeGCF_034188625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 530 aa (28.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
428-513 aa · 86 aa · 16.2% of protein
Raw token
HATPase_c:428:0.0000000385:513:90:109- Raw architecture: HisKA:309:0.0000000000000133:375:67:64#HATPase_c:428:0.0000000385:513:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034188625::NZ_JAXHQO010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span275979-278256Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSRA80_01225RefSeq proteinWP_165483930.1
Context group ID
GCF_034188625::NZ_JAXHQO010000001.1::G00003Context members
SRA80_RS01225SRA80_RS01230
Partner locus tags
SRA80_RS01225SRA80_RS01230
Partner old locus tags
SRA80_01225SRA80_01230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_165483930.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSRA80_RS01225Primary locus identifier stored in the genes table.
Old locus tagSRA80_01225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHQO010000001.1Sequence record reported by the local genomic context database.
Genomic interval275 979-277 571 nt1 593 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span275 979-278 256 ntGCF_034188625::NZ_JAXHQO010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188625::NZ_JAXHQO010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHQO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span275 979-278 256 nt2 278 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
275 979 nt278 256 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SRA80_RS01225GCF_034188625#SRA80_RS01225
HKClassicCurrent focus
275 979-277 571 nt · Reverse (-)
SRA80_RS01230GCF_034188625#SRA80_RS01230
RROmpR
277 540-278 256 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034188625#SRA80_RS01225The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1358344
Simplified PFAM architecture for HKOC_1358344
PFAM domain coverage: 191 / 530 aa (36.0%)
1 aa530 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[255-295] | HisKA[310-375] | HATPase_c[427-510]
- Domain count: 3
- Matched identifier: HKOC_1358344
- Positioned domains: HAMP 255-295 ; HisKA 310-375 ; HATPase_c 427-510
Cluster members and taxonomy
Representative gene: GCF_034188625#SRA80_RS01225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188625
AssemblyASM3418862v1 · Contighaploid
Genome composition4 225 642 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key