1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:1.24e-28:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ528_RS16105
Response regulator OmpR family
Clostridioides difficile · GCF_034188315
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034188315#SQ528_RS16105Stable P2CS identifier used across views.
GenomeGCF_034188315Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 228 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:148:2.04e-19:223:77:77- Raw architecture: Response_reg:3:1.24e-28:115:113:111#Trans_reg_C:148:2.04e-19:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034188315::NZ_JAXHRE010000052.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9008-10980Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ528_16090RefSeq proteinWP_074441456.1
Context group ID
GCF_034188315::NZ_JAXHRE010000052.1::G00049Context members
SQ528_RS16105SQ528_RS16110
Partner locus tags
SQ528_RS16105SQ528_RS16110
Partner old locus tags
SQ528_16090SQ528_16095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074441456.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ528_RS16105Primary locus identifier stored in the genes table.
Old locus tagSQ528_16090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRE010000052.1Sequence record reported by the local genomic context database.
Genomic interval9 008-9 694 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 008-10 980 ntGCF_034188315::NZ_JAXHRE010000052.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188315::NZ_JAXHRE010000052.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRE010000052.1All displayed genes belong to this local TCS context.
Neighborhood span9 008-10 980 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 008 nt10 980 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ528_RS16105GCF_034188315#SQ528_RS16105
RROmpRCurrent focus
9 008-9 694 nt · Forward (+)
SQ528_RS16110GCF_034188315#SQ528_RS16110
HKClassic
9 688-10 980 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007001945#EWL97_RS19270Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1318183
Simplified PFAM architecture for RROC_1318183
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1318183
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_007001945#EWL97_RS19270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188315
AssemblyASM3418831v1 · Contighaploid
Genome composition4 239 228 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key