1 Response_reg#1
3-114 aa · 112 aa · 73.2% of protein
Raw token
Response_reg:3:1.5e-26:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ528_RS13530
Response regulator, CheY family
Clostridioides difficile · GCF_034188315
ClassRRTypeCheYLength153 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034188315#SQ528_RS13530Stable P2CS identifier used across views.
GenomeGCF_034188315Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length153 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 153 aa (73.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa153 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.5e-26:114:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034188315::NZ_JAXHRE010000035.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17662-20117Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ528_13520RefSeq proteinWP_321128645.1
Context group ID
GCF_034188315::NZ_JAXHRE010000035.1::G00038Context members
SQ528_RS13525SQ528_RS13530
Partner locus tags
SQ528_RS13525SQ528_RS13530
Partner old locus tags
SQ528_13515SQ528_13520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321128645.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ528_RS13530Primary locus identifier stored in the genes table.
Old locus tagSQ528_13520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRE010000035.1Sequence record reported by the local genomic context database.
Genomic interval19 656-20 117 nt462 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 662-20 117 ntGCF_034188315::NZ_JAXHRE010000035.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188315::NZ_JAXHRE010000035.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRE010000035.1All displayed genes belong to this local TCS context.
Neighborhood span17 662-20 117 nt2 456 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 662 nt20 117 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ528_RS13525GCF_034188315#SQ528_RS13525
HKClassic
17 662-19 656 nt · Forward (+)
SQ528_RS13530GCF_034188315#SQ528_RS13530
RRCheYCurrent focus
19 656-20 117 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034188315#SQ528_RS13530The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2221146
Simplified PFAM architecture for RROC_2221146
PFAM domain coverage: 111 / 153 aa (72.5%)
1 aa153 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-113]
- Domain count: 1
- Matched identifier: RROC_2221146
- Positioned domains: Response_reg 3-113
Cluster members and taxonomy
Representative gene: GCF_034188315#SQ528_RS13530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188315
AssemblyASM3418831v1 · Contighaploid
Genome composition4 239 228 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key