1 Response_reg#1
1-98 aa · 98 aa · 44.3% of protein
Raw token
Response_reg:1:1.68e-28:98:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ528_RS00920
Response regulator OmpR family
Clostridioides difficile · GCF_034188315
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034188315#SQ528_RS00920Stable P2CS identifier used across views.
GenomeGCF_034188315Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 221 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-218 aa · 76 aa · 34.4% of protein
Raw token
Trans_reg_C:143:4.41e-30:218:77:77- Raw architecture: Response_reg:1:1.68e-28:98:99:111#Trans_reg_C:143:4.41e-30:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034188315::NZ_JAXHRE010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span207462-210436Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ528_00920RefSeq proteinWP_321128624.1
Context group ID
GCF_034188315::NZ_JAXHRE010000001.1::G00003Context members
SQ528_RS00915SQ528_RS00920
Partner locus tags
SQ528_RS00915SQ528_RS00920
Partner old locus tags
SQ528_00915SQ528_00920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321128624.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ528_RS00920Primary locus identifier stored in the genes table.
Old locus tagSQ528_00920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRE010000001.1Sequence record reported by the local genomic context database.
Genomic interval209 770-210 436 nt667 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span207 462-210 436 ntGCF_034188315::NZ_JAXHRE010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188315::NZ_JAXHRE010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span207 462-210 436 nt2 975 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
207 462 nt210 436 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ528_RS00915GCF_034188315#SQ528_RS00915
HKClassic
207 462-209 798 nt · Reverse (-)
SQ528_RS00920GCF_034188315#SQ528_RS00920
RROmpRCurrent focus
209 770-210 436 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0215280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932517
Simplified PFAM architecture for RROC_0932517
PFAM domain coverage: 183 / 238 aa (76.9%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[161-234]
- Domain count: 2
- Matched identifier: RROC_0932517
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 161-234 ; Trans_reg_C 161-234
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0215280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188315
AssemblyASM3418831v1 · Contighaploid
Genome composition4 239 228 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key