1 Response_reg#1
3-112 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:3:4.09e-34:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ624_RS07540
Response regulator OmpR family
Clostridioides difficile · GCF_034187965
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034187965#SQ624_RS07540Stable P2CS identifier used across views.
GenomeGCF_034187965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:146:5.95e-26:221:78:77- Raw architecture: Response_reg:3:4.09e-34:112:110:111#Trans_reg_C:146:5.95e-26:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034187965::NZ_JAXHRB010000005.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span233118-234829Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ624_07540RefSeq proteinWP_117440179.1
Context group ID
GCF_034187965::NZ_JAXHRB010000005.1::G00021Context members
SQ624_RS07535SQ624_RS07540
Partner locus tags
SQ624_RS07535SQ624_RS07540
Partner old locus tags
SQ624_07535SQ624_07540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117440179.1Primary protein accession used for annex mappings.
UniProt accessionA0A926HXU4Primary UniProt accession resolved in the annex database.
UniProt IDA0A926HXU4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ624_RS07540Primary locus identifier stored in the genes table.
Old locus tagSQ624_07540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRB010000005.1Sequence record reported by the local genomic context database.
Genomic interval234 146-234 829 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span233 118-234 829 ntGCF_034187965::NZ_JAXHRB010000005.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034187965::NZ_JAXHRB010000005.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span233 118-234 829 nt1 712 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
233 118 nt234 829 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ624_RS07535GCF_034187965#SQ624_RS07535
HKClassic
233 118-234 149 nt · Reverse (-)
SQ624_RS07540GCF_034187965#SQ624_RS07540
RROmpRCurrent focus
234 146-234 829 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470065#DW703_RS13550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1366897
Simplified PFAM architecture for RROC_1366897
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1366897
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_003470065#DW703_RS13550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034187965
AssemblyASM3418796v1 · Contighaploid
Genome composition4 253 996 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key