1 HisKA#1
196-260 aa · 65 aa · 15.3% of protein
Raw token
HisKA:196:0.0000000000139:260:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ624_RS02040
Histidine kinase, Classic
Clostridioides difficile · GCF_034187965
ClassHKTypeClassicLength425 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034187965#SQ624_RS02040Stable P2CS identifier used across views.
GenomeGCF_034187965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length425 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 425 aa (43.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa425 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
307-424 aa · 118 aa · 27.8% of protein
Raw token
HATPase_c:307:2.86e-18:424:119:109- Raw architecture: HisKA:196:0.0000000000139:260:65:64#HATPase_c:307:2.86e-18:424:119:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034187965::NZ_JAXHRB010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span453517-455446Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ624_02040RefSeq proteinWP_003430623.1
Context group ID
GCF_034187965::NZ_JAXHRB010000001.1::G00004Context members
SQ624_RS02035SQ624_RS02040
Partner locus tags
SQ624_RS02035SQ624_RS02040
Partner old locus tags
SQ624_02035SQ624_02040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003430623.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3TX31Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3TX31_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ624_RS02040Primary locus identifier stored in the genes table.
Old locus tagSQ624_02040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRB010000001.1Sequence record reported by the local genomic context database.
Genomic interval454 169-455 446 nt1 278 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span453 517-455 446 ntGCF_034187965::NZ_JAXHRB010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034187965::NZ_JAXHRB010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span453 517-455 446 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
453 517 nt455 446 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ624_RS02035GCF_034187965#SQ624_RS02035
RROmpR
453 517-454 185 nt · Forward (+)
SQ624_RS02040GCF_034187965#SQ624_RS02040
HKClassicCurrent focus
454 169-455 446 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS10870Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2216087
Simplified PFAM architecture for HKOC_2216087
PFAM domain coverage: 179 / 425 aa (42.1%)
1 aa425 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[197-260] | HATPase_c[308-422]
- Domain count: 2
- Matched identifier: HKOC_2216087
- Positioned domains: HisKA 197-260 ; HATPase_c 308-422
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS10870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034187965
AssemblyASM3418796v1 · Contighaploid
Genome composition4 253 996 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key