1 Response_reg#1
5-112 aa · 108 aa · 20.0% of protein
Raw token
Response_reg:5:6.47e-26:112:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS09395
Response regulator, unclassified
Eisenbergiella porci · GCF_034172685
ClassRRTypeunclassifiedLength539 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034172685#SPF95_RS09395Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length539 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage137 / 539 aa (25.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa539 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
504-532 aa · 29 aa · 5.4% of protein
Raw token
HTH_AraC:504:0.000000248:532:29:42- Raw architecture: Response_reg:5:6.47e-26:112:108:111#HTH_AraC:504:0.000000248:532:29:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034172685::NZ_JAXFEN010000053.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10742-14166Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_09390RefSeq proteinWP_321084996.1
Context group ID
GCF_034172685::NZ_JAXFEN010000053.1::G00047Context members
SPF95_RS09395SPF95_RS09400
Partner locus tags
SPF95_RS09395SPF95_RS09400
Partner old locus tags
SPF95_09390SPF95_09395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321084996.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS09395Primary locus identifier stored in the genes table.
Old locus tagSPF95_09390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000053.1Sequence record reported by the local genomic context database.
Genomic interval10 742-12 361 nt1 620 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 742-14 166 ntGCF_034172685::NZ_JAXFEN010000053.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000053.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000053.1All displayed genes belong to this local TCS context.
Neighborhood span10 742-14 166 nt3 425 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 742 nt14 166 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPF95_RS09395GCF_034172685#SPF95_RS09395
RRunclassifiedCurrent focus
10 742-12 361 nt · Forward (+)
SPF95_RS09400GCF_034172685#SPF95_RS09400
HKClassic
12 361-14 166 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034172685#SPF95_RS09395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0093187
Simplified PFAM architecture for RROC_0093187
PFAM domain coverage: 323 / 539 aa (59.9%)
1 aa539 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-113] | GGDEF_2[162-297] | HTH_18[457-534]
- Domain count: 3
- Matched identifier: RROC_0093187
- Positioned domains: Response_reg 5-113 ; GGDEF_2 162-297 ; HTH_18 457-534
Cluster members and taxonomy
Representative gene: GCF_034172685#SPF95_RS09395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key