1 Response_reg#1
6-116 aa · 111 aa · 46.8% of protein
Raw token
Response_reg:6:9.94e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS03045
Response regulator OmpR family
Eisenbergiella porci · GCF_034172685
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034172685#SPF95_RS03045Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-234 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:159:3.89e-30:234:77:77- Raw architecture: Response_reg:6:9.94e-36:116:111:111#Trans_reg_C:159:3.89e-30:234:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034172685::NZ_JAXFEN010000015.1::G00070
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span43126-48534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_03040RefSeq proteinWP_025489923.1
Context group ID
GCF_034172685::NZ_JAXFEN010000015.1::G00070Context members
SPF95_RS03045SPF95_RS03050SPF95_RS03055SPF95_RS03060
Partner locus tags
SPF95_RS03045SPF95_RS03050SPF95_RS03055SPF95_RS03060
Partner old locus tags
SPF95_03040SPF95_03045SPF95_03050SPF95_03055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025489923.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WA85Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WA85_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS03045Primary locus identifier stored in the genes table.
Old locus tagSPF95_03040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000015.1Sequence record reported by the local genomic context database.
Genomic interval43 126-43 839 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 126-48 534 ntGCF_034172685::NZ_JAXFEN010000015.1::G00070
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000015.1::G00070Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000015.1All displayed genes belong to this local TCS context.
Neighborhood span43 126-48 534 nt5 409 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 126 nt48 534 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
SPF95_RS03045GCF_034172685#SPF95_RS03045
RROmpRCurrent focus
43 126-43 839 nt · Forward (+)
SPF95_RS03050GCF_034172685#SPF95_RS03050
HKClassic
43 814-46 666 nt · Forward (+)
SPF95_RS03055GCF_034172685#SPF95_RS03055
RROmpR
46 742-47 419 nt · Forward (+)
SPF95_RS03060GCF_034172685#SPF95_RS03060
HKClassic
47 389-48 534 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS23385Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962963
Simplified PFAM architecture for RROC_0962963
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[159-234]
- Domain count: 2
- Matched identifier: RROC_0962963
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 159-234 ; Trans_reg_C 159-234
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS23385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key