1 His_kinase#1
403-484 aa · 82 aa · 13.4% of protein
Raw token
His_kinase:403:7.05e-30:484:82:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS21380
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS21380Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 611 aa (30.8%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
503-608 aa · 106 aa · 17.3% of protein
Raw token
HATPase_c:503:0.0000000000000368:608:108:109- Raw architecture: His_kinase:403:7.05e-30:484:82:80#HATPase_c:503:0.0000000000000368:608:108:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000335.1::G00116
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span281-2840Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000335.1::G00116Context members
U0E70_RS21375U0E70_RS21380
Partner locus tags
U0E70_RS21375U0E70_RS21380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321009279.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS21380Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000335.1Sequence record reported by the local genomic context database.
Genomic interval1 005-2 840 nt1 836 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span281-2 840 ntGCF_034143205::NZ_JAWZCP010000335.1::G00116
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000335.1::G00116Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000335.1All displayed genes belong to this local TCS context.
Neighborhood span281-2 840 nt2 560 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
281 nt2 840 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS21375GCF_034143205#U0E70_RS21375
RRunclassified
281-1 015 nt · Forward (+)
U0E70_RS21380GCF_034143205#U0E70_RS21380
HKClassicCurrent focus
1 005-2 840 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034143205#U0E70_RS21380The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1003461
Simplified PFAM architecture for HKOC_1003461
PFAM domain coverage: 187 / 611 aa (30.6%)
1 aa611 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[404-484] | HATPase_c[503-608]
- Domain count: 2
- Matched identifier: HKOC_1003461
- Positioned domains: His_kinase 404-484 ; HATPase_c 503-608
Cluster members and taxonomy
Representative gene: GCF_034143205#U0E70_RS21380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key