1 Response_reg#1
3-116 aa · 114 aa · 21.5% of protein
Raw token
Response_reg:3:1.06e-21:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS00885
Response regulator, unclassified
Hungatella effluvii · GCF_034143205
ClassRRTypeunclassifiedLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS00885Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 530 aa (28.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
491-528 aa · 38 aa · 7.2% of protein
Raw token
HTH_AraC:491:0.00000000435:528:38:42- Raw architecture: Response_reg:3:1.06e-21:116:114:111#HTH_AraC:491:0.00000000435:528:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000016.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1568-5109Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000016.1::G00005Context members
U0E70_RS00885U0E70_RS00890
Partner locus tags
U0E70_RS00885U0E70_RS00890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321007863.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS00885Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000016.1Sequence record reported by the local genomic context database.
Genomic interval1 568-3 160 nt1 593 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 568-5 109 ntGCF_034143205::NZ_JAWZCP010000016.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000016.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000016.1All displayed genes belong to this local TCS context.
Neighborhood span1 568-5 109 nt3 542 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 568 nt5 109 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS00885GCF_034143205#U0E70_RS00885
RRunclassifiedCurrent focus
1 568-3 160 nt · Reverse (-)
U0E70_RS00890GCF_034143205#U0E70_RS00890
HKClassic
3 184-5 109 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034143205#U0E70_RS00885The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0112299
Simplified PFAM architecture for RROC_0112299
PFAM domain coverage: 193 / 530 aa (36.4%)
1 aa530 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-116] | HTH_18[450-528]
- Domain count: 2
- Matched identifier: RROC_0112299
- Positioned domains: Response_reg 3-116 ; HTH_18 450-528
Cluster members and taxonomy
Representative gene: GCF_034143205#U0E70_RS00885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key