1 HAMP#1
290-356 aa · 67 aa · 11.6% of protein
Raw token
HAMP:290:0.0000000000899:356:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS19005
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS19005Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 577 aa (43.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-450 aa · 79 aa · 13.7% of protein
Raw token
His_kinase:372:2.19e-23:450:79:803 HATPase_c#3
469-570 aa · 102 aa · 17.7% of protein
Raw token
HATPase_c:469:0.0000000000000129:570:111:109- Raw architecture: HAMP:290:0.0000000000899:356:67:69#His_kinase:372:2.19e-23:450:79:80#HATPase_c:469:0.0000000000000129:570:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000296.1::G00106
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4240-7460Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000296.1::G00106Context members
U0E70_RS19005U0E70_RS19010
Partner locus tags
U0E70_RS19005U0E70_RS19010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321009112.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS19005Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000296.1Sequence record reported by the local genomic context database.
Genomic interval4 240-5 973 nt1 734 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 240-7 460 ntGCF_034143205::NZ_JAWZCP010000296.1::G00106
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000296.1::G00106Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000296.1All displayed genes belong to this local TCS context.
Neighborhood span4 240-7 460 nt3 221 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 240 nt7 460 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS19005GCF_034143205#U0E70_RS19005
HKClassicCurrent focus
4 240-5 973 nt · Reverse (-)
U0E70_RS19010GCF_034143205#U0E70_RS19010
RRunclassified
5 973-7 460 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034143205#U0E70_RS19005The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1180918
Simplified PFAM architecture for HKOC_1180918
PFAM domain coverage: 231 / 577 aa (40.0%)
1 aa577 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[305-355] | His_kinase[372-448] | HATPase_c[469-571]
- Domain count: 3
- Matched identifier: HKOC_1180918
- Positioned domains: HAMP 305-355 ; His_kinase 372-448 ; HATPase_c 469-571
Cluster members and taxonomy
Representative gene: GCF_034143205#U0E70_RS19005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key