1 HisKA#1
560-626 aa · 67 aa · 8.5% of protein
Raw token
HisKA:560:1.52e-16:626:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS15550
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength792 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS15550Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length792 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 792 aa (21.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa792 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
678-781 aa · 104 aa · 13.1% of protein
Raw token
HATPase_c:678:0.000000000000152:781:109:109- Raw architecture: HisKA:560:1.52e-16:626:67:64#HATPase_c:678:0.000000000000152:781:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000237.1::G00085
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16691-19766Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000237.1::G00085Context members
U0E70_RS15545U0E70_RS15550
Partner locus tags
U0E70_RS15545U0E70_RS15550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321008873.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS15550Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000237.1Sequence record reported by the local genomic context database.
Genomic interval17 388-19 766 nt2 379 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 691-19 766 ntGCF_034143205::NZ_JAWZCP010000237.1::G00085
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000237.1::G00085Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000237.1All displayed genes belong to this local TCS context.
Neighborhood span16 691-19 766 nt3 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 691 nt19 766 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS15545GCF_034143205#U0E70_RS15545
RROmpR
16 691-17 404 nt · Forward (+)
U0E70_RS15550GCF_034143205#U0E70_RS15550
HKClassicCurrent focus
17 388-19 766 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034143205#U0E70_RS15550The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0572970
Simplified PFAM architecture for HKOC_0572970
PFAM domain coverage: 172 / 792 aa (21.7%)
1 aa792 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[560-625] | HATPase_c[673-778]
- Domain count: 2
- Matched identifier: HKOC_0572970
- Positioned domains: HisKA 560-625 ; HATPase_c 673-778
Cluster members and taxonomy
Representative gene: GCF_034143205#U0E70_RS15550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key