1 sCache_like#1
64-131 aa · 68 aa · 14.7% of protein
Raw token
sCache_like:64:0.0000321:131:68:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS12110
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS12110Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 462 aa (52.8%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HisKA#2
242-307 aa · 66 aa · 14.3% of protein
Raw token
HisKA:242:5.83e-18:307:66:643 HATPase_c#3
352-461 aa · 110 aa · 23.8% of protein
Raw token
HATPase_c:352:1.96e-34:461:110:109- Raw architecture: sCache_like:64:0.0000321:131:68:114#HisKA:242:5.83e-18:307:66:64#HATPase_c:352:1.96e-34:461:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000190.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span854-2936Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000190.1::G00058Context members
U0E70_RS12110U0E70_RS12115
Partner locus tags
U0E70_RS12110U0E70_RS12115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320933506.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS12110Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000190.1Sequence record reported by the local genomic context database.
Genomic interval854-2 242 nt1 389 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span854-2 936 ntGCF_034143205::NZ_JAWZCP010000190.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000190.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000190.1All displayed genes belong to this local TCS context.
Neighborhood span854-2 936 nt2 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
854 nt2 936 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS12110GCF_034143205#U0E70_RS12110
HKClassicCurrent focus
854-2 242 nt · Reverse (-)
U0E70_RS12115GCF_034143205#U0E70_RS12115
RROmpR
2 244-2 936 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS17670Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1816240
Simplified PFAM architecture for HKOC_1816240
PFAM domain coverage: 174 / 462 aa (37.7%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[242-307] | HATPase_c[354-461]
- Domain count: 2
- Matched identifier: HKOC_1816240
- Positioned domains: HisKA 242-307 ; HATPase_c 354-461
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS17670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key