1 dCache_1#1
104-218 aa · 115 aa · 21.7% of protein
Raw token
dCache_1:104:0.00000000153:218:115:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS11850
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS11850Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage374 / 530 aa (70.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation4 items
2 HAMP#2
237-306 aa · 70 aa · 13.2% of protein
Raw token
HAMP:237:0.000000000000136:306:70:693 His_kinase#3
323-402 aa · 80 aa · 15.1% of protein
Raw token
His_kinase:323:3.02e-30:402:80:804 HATPase_c#4
419-527 aa · 109 aa · 20.6% of protein
Raw token
HATPase_c:419:0.0000000345:527:112:109- Raw architecture: dCache_1:104:0.00000000153:218:115:195#HAMP:237:0.000000000000136:306:70:69#His_kinase:323:3.02e-30:402:80:80#HATPase_c:419:0.0000000345:527:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000184.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2835-4722Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000184.1::G00056Context members
U0E70_RS11850U0E70_RS11855
Partner locus tags
U0E70_RS11850U0E70_RS11855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321008631.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS11850Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000184.1Sequence record reported by the local genomic context database.
Genomic interval2 835-4 428 nt1 594 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 835-4 722 ntGCF_034143205::NZ_JAWZCP010000184.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000184.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000184.1All displayed genes belong to this local TCS context.
Neighborhood span2 835-4 722 nt1 888 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 835 nt4 722 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS11850GCF_034143205#U0E70_RS11850
HKClassicCurrent focus
2 835-4 428 nt · Forward (+)
U0E70_RS11855GCF_034143205#U0E70_RS11855
RRCheY
4 425-4 722 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034127555#U0C30_RS00015Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1040413
Simplified PFAM architecture for HKOC_1040413
PFAM domain coverage: 474 / 603 aa (78.6%)
1 aa603 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[43-279] | HAMP[327-379] | His_kinase[396-473] | HATPase_c[494-599]
- Domain count: 4
- Matched identifier: HKOC_1040413
- Positioned domains: dCache_1 43-279 ; HAMP 327-379 ; His_kinase 396-473 ; HATPase_c 494-599
Cluster members and taxonomy
Representative gene: GCF_034127555#U0C30_RS00015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key