1 HAMP#1
128-199 aa · 72 aa · 16.9% of protein
Raw token
HAMP:128:0.000000105:199:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS11595
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength425 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS11595Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length425 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 425 aa (56.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa425 aa
Domain-by-domain annotation3 items
2 HisKA#2
210-270 aa · 61 aa · 14.4% of protein
Raw token
HisKA:210:0.000000000000323:270:61:643 HATPase_c#3
315-422 aa · 108 aa · 25.4% of protein
Raw token
HATPase_c:315:6.01e-26:422:110:109- Raw architecture: HAMP:128:0.000000105:199:72:69#HisKA:210:0.000000000000323:270:61:64#HATPase_c:315:6.01e-26:422:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000180.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4306-6265Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000180.1::G00055Context members
U0E70_RS11595U0E70_RS11600
Partner locus tags
U0E70_RS11595U0E70_RS11600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320933677.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS11595Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000180.1Sequence record reported by the local genomic context database.
Genomic interval4 306-5 583 nt1 278 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 306-6 265 ntGCF_034143205::NZ_JAWZCP010000180.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000180.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000180.1All displayed genes belong to this local TCS context.
Neighborhood span4 306-6 265 nt1 960 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 306 nt6 265 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS11595GCF_034143205#U0E70_RS11595
HKClassicCurrent focus
4 306-5 583 nt · Reverse (-)
U0E70_RS11600GCF_034143205#U0E70_RS11600
RROmpR
5 576-6 265 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS19640Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2221013
Simplified PFAM architecture for HKOC_2221013
PFAM domain coverage: 167 / 425 aa (39.3%)
1 aa425 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[211-270] | HATPase_c[315-421]
- Domain count: 2
- Matched identifier: HKOC_2221013
- Positioned domains: HisKA 211-270 ; HATPase_c 315-421
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS19640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key