1 Response_reg#1
5-114 aa · 110 aa · 20.7% of protein
Raw token
Response_reg:5:9.78e-30:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS11325
Response regulator, unclassified
Hungatella effluvii · GCF_034143205
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034143205#U0E70_RS11325Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 532 aa (35.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
437-478 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:437:0.00000000292:478:42:423 HTH_AraC#3
492-526 aa · 35 aa · 6.6% of protein
Raw token
HTH_AraC:492:0.00000168:526:35:42- Raw architecture: Response_reg:5:9.78e-30:114:110:111#HTH_AraC:437:0.00000000292:478:42:42#HTH_AraC:492:0.00000168:526:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034143205::NZ_JAWZCP010000176.1::G00053
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span507-2105Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000176.1::G00053Context members
U0E70_RS11325
Partner locus tags
U0E70_RS11325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321008590.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS11325Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000176.1Sequence record reported by the local genomic context database.
Genomic interval507-2 105 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span507-2 105 ntGCF_034143205::NZ_JAWZCP010000176.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000176.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000176.1All displayed genes belong to this local TCS context.
Neighborhood span507-2 105 nt1 599 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
507 nt2 105 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E70_RS11325GCF_034143205#U0E70_RS11325
RRunclassifiedCurrent focus
507-2 105 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS12465Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0109079
Simplified PFAM architecture for RROC_0109079
PFAM domain coverage: 314 / 532 aa (59.0%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-115] | GGDEF_2[166-290] | HTH_18[451-528]
- Domain count: 3
- Matched identifier: RROC_0109079
- Positioned domains: Response_reg 5-115 ; GGDEF_2 166-290 ; HTH_18 451-528
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS12465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key