1 dCache_1#1
33-266 aa · 234 aa · 41.0% of protein
Raw token
dCache_1:33:0.00000431:266:248:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS08740
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength571 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS08740Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length571 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage491 / 571 aa (86.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa571 aa
Domain-by-domain annotation4 items
2 HAMP#2
285-354 aa · 70 aa · 12.3% of protein
Raw token
HAMP:285:0.000000000763:354:70:693 His_kinase#3
369-448 aa · 80 aa · 14.0% of protein
Raw token
His_kinase:369:3.93e-28:448:80:804 HATPase_c#4
465-571 aa · 107 aa · 18.7% of protein
Raw token
HATPase_c:465:0.0000000144:571:110:109- Raw architecture: dCache_1:33:0.00000431:266:248:195#HAMP:285:0.000000000763:354:70:69#His_kinase:369:3.93e-28:448:80:80#HATPase_c:465:0.0000000144:571:110:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000131.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3329-6618Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000131.1::G00042Context members
U0E70_RS08740U0E70_RS08745
Partner locus tags
U0E70_RS08740U0E70_RS08745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321008415.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS08740Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000131.1Sequence record reported by the local genomic context database.
Genomic interval3 329-5 044 nt1 716 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 329-6 618 ntGCF_034143205::NZ_JAWZCP010000131.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000131.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000131.1All displayed genes belong to this local TCS context.
Neighborhood span3 329-6 618 nt3 290 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 329 nt6 618 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS08740GCF_034143205#U0E70_RS08740
HKClassicCurrent focus
3 329-5 044 nt · Forward (+)
U0E70_RS08745GCF_034143205#U0E70_RS08745
RRunclassified
5 077-6 618 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034143205#U0E70_RS08740The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1210355
Simplified PFAM architecture for HKOC_1210355
PFAM domain coverage: 180 / 571 aa (31.5%)
1 aa571 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[369-446] | HATPase_c[466-567]
- Domain count: 2
- Matched identifier: HKOC_1210355
- Positioned domains: His_kinase 369-446 ; HATPase_c 466-567
Cluster members and taxonomy
Representative gene: GCF_034143205#U0E70_RS08740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key