1 HAMP#1
297-366 aa · 70 aa · 11.9% of protein
Raw token
HAMP:297:0.00000000129:366:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS08420
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength590 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS08420Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length590 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 590 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa590 aa
Domain-by-domain annotation3 items
2 His_kinase#2
381-460 aa · 80 aa · 13.6% of protein
Raw token
His_kinase:381:8.82e-25:460:80:803 HATPase_c#3
477-585 aa · 109 aa · 18.5% of protein
Raw token
HATPase_c:477:0.00000000156:585:112:109- Raw architecture: HAMP:297:0.00000000129:366:70:69#His_kinase:381:8.82e-25:460:80:80#HATPase_c:477:0.00000000156:585:112:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000126.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2251Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000126.1::G00041Context members
U0E70_RS08415U0E70_RS08420
Partner locus tags
U0E70_RS08415U0E70_RS08420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321008393.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS08420Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000126.1Sequence record reported by the local genomic context database.
Genomic interval479-2 251 nt1 773 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-2 251 ntGCF_034143205::NZ_JAWZCP010000126.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000126.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000126.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 251 nt2 251 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 251 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS08415GCF_034143205#U0E70_RS08415
RRCheY
1-482 nt · Reverse (-)
U0E70_RS08420GCF_034143205#U0E70_RS08420
HKClassicCurrent focus
479-2 251 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034143205#U0E70_RS08420The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1113376
Simplified PFAM architecture for HKOC_1113376
PFAM domain coverage: 237 / 590 aa (40.2%)
1 aa590 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[316-366] | His_kinase[381-458] | HATPase_c[477-584]
- Domain count: 3
- Matched identifier: HKOC_1113376
- Positioned domains: HAMP 316-366 ; His_kinase 381-458 ; HATPase_c 477-584
Cluster members and taxonomy
Representative gene: GCF_034143205#U0E70_RS08420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key