1 Response_reg#1
5-113 aa · 109 aa · 44.5% of protein
Raw token
Response_reg:5:1.24e-25:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS07960
Response regulator, unclassified
Hungatella effluvii · GCF_034143205
ClassRRTypeunclassifiedLength245 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS07960Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 245 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
148-187 aa · 40 aa · 16.3% of protein
Raw token
HTH_AraC:148:0.0000555:187:41:423 HTH_AraC#3
208-238 aa · 31 aa · 12.7% of protein
Raw token
HTH_AraC:208:0.0000000305:238:31:42- Raw architecture: Response_reg:5:1.24e-25:113:110:111#HTH_AraC:148:0.0000555:187:41:42#HTH_AraC:208:0.0000000305:238:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000117.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25060-27572Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000117.1::G00039Context members
U0E70_RS07960U0E70_RS07965
Partner locus tags
U0E70_RS07960U0E70_RS07965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002601025.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P5I9Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P5I9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS07960Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000117.1Sequence record reported by the local genomic context database.
Genomic interval25 060-25 797 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 060-27 572 ntGCF_034143205::NZ_JAWZCP010000117.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000117.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000117.1All displayed genes belong to this local TCS context.
Neighborhood span25 060-27 572 nt2 513 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 060 nt27 572 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS07960GCF_034143205#U0E70_RS07960
RRunclassifiedCurrent focus
25 060-25 797 nt · Forward (+)
U0E70_RS07965GCF_034143205#U0E70_RS07965
HKClassic
25 794-27 572 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS06050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0789986
Simplified PFAM architecture for RROC_0789986
PFAM domain coverage: 187 / 245 aa (76.3%)
1 aa245 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-113] | HTH_18[161-238]
- Domain count: 2
- Matched identifier: RROC_0789986
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; HTH_18 161-238 ; HTH_18 161-238
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS06050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key