1 dCache_1#1
204-313 aa · 110 aa · 16.8% of protein
Raw token
dCache_1:204:0.00000003:313:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS07890
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength653 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS07890Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length653 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage363 / 653 aa (55.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa653 aa
Domain-by-domain annotation4 items
2 HAMP#2
337-402 aa · 66 aa · 10.1% of protein
Raw token
HAMP:337:0.0000000000133:402:66:693 His_kinase#3
427-508 aa · 82 aa · 12.6% of protein
Raw token
His_kinase:427:5.17e-24:508:82:804 HATPase_c#4
528-632 aa · 105 aa · 16.1% of protein
Raw token
HATPase_c:528:0.00000000000000166:632:108:109- Raw architecture: dCache_1:204:0.00000003:313:113:195#HAMP:337:0.0000000000133:402:66:69#His_kinase:427:5.17e-24:508:82:80#HATPase_c:528:0.00000000000000166:632:108:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000117.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6167-9626Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000117.1::G00037Context members
U0E70_RS07890U0E70_RS07895
Partner locus tags
U0E70_RS07890U0E70_RS07895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_181987896.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3E764Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3E764_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS07890Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000117.1Sequence record reported by the local genomic context database.
Genomic interval6 167-8 128 nt1 962 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 167-9 626 ntGCF_034143205::NZ_JAWZCP010000117.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000117.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000117.1All displayed genes belong to this local TCS context.
Neighborhood span6 167-9 626 nt3 460 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 167 nt9 626 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS07890GCF_034143205#U0E70_RS07890
HKClassicCurrent focus
6 167-8 128 nt · Forward (+)
U0E70_RS07895GCF_034143205#U0E70_RS07895
RRunclassified
8 100-9 626 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS08835Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0890152
Simplified PFAM architecture for HKOC_0890152
PFAM domain coverage: 489 / 653 aa (74.9%)
1 aa653 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[55-313] | HAMP[358-402] | His_kinase[427-507] | HATPase_c[528-631]
- Domain count: 4
- Matched identifier: HKOC_0890152
- Positioned domains: dCache_1 55-313 ; HAMP 358-402 ; His_kinase 427-507 ; HATPase_c 528-631
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS08835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key