1 Response_reg#1
4-108 aa · 105 aa · 44.7% of protein
Raw token
Response_reg:4:3.02e-22:108:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS07820
Response regulator LytTR family
Hungatella effluvii · GCF_034143205
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034143205#U0E70_RS07820Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 235 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-227 aa · 87 aa · 37.0% of protein
Raw token
LytTR:141:9.52e-19:227:93:98- Raw architecture: Response_reg:4:3.02e-22:108:110:111#LytTR:141:9.52e-19:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034143205::NZ_JAWZCP010000116.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19485-20192Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000116.1::G00036Context members
U0E70_RS07820
Partner locus tags
U0E70_RS07820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321008341.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS07820Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000116.1Sequence record reported by the local genomic context database.
Genomic interval19 485-20 192 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 485-20 192 ntGCF_034143205::NZ_JAWZCP010000116.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000116.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000116.1All displayed genes belong to this local TCS context.
Neighborhood span19 485-20 192 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 485 nt20 192 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E70_RS07820GCF_034143205#U0E70_RS07820
RRLytTRCurrent focus
19 485-20 192 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034143205#U0E70_RS07820The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1037233
Simplified PFAM architecture for RROC_1037233
PFAM domain coverage: 192 / 235 aa (81.7%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[141-227]
- Domain count: 2
- Matched identifier: RROC_1037233
- Positioned domains: Response_reg 4-108 ; LytTR 141-227
Cluster members and taxonomy
Representative gene: GCF_034143205#U0E70_RS07820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key