1 SBP_bac_3#1
54-245 aa · 192 aa · 20.0% of protein
Raw token
SBP_bac_3:54:0.00000000000000982:245:204:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS06105
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034143205
ClassHKTypeHybridLength960 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034143205#U0E70_RS06105Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length960 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage709 / 960 aa (73.9%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa960 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
285-485 aa · 201 aa · 20.9% of protein
Raw token
SBP_bac_3:285:2.12e-16:485:219:2243 HisKA#3
557-623 aa · 67 aa · 7.0% of protein
Raw token
HisKA:557:4.59e-17:623:67:644 HATPase_c#4
669-804 aa · 136 aa · 14.2% of protein
Raw token
HATPase_c:669:1.32e-25:804:137:1095 Response_reg#5
830-942 aa · 113 aa · 11.8% of protein
Raw token
Response_reg:830:1.04e-25:942:113:111- Raw architecture: SBP_bac_3:54:0.00000000000000982:245:204:224#SBP_bac_3:285:2.12e-16:485:219:224#HisKA:557:4.59e-17:623:67:64#HATPase_c:669:1.32e-25:804:137:109#Response_reg:830:1.04e-25:942:113:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034143205::NZ_JAWZCP010000084.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span37558-40440Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000084.1::G00031Context members
U0E70_RS06105
Partner locus tags
U0E70_RS06105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321008212.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS06105Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000084.1Sequence record reported by the local genomic context database.
Genomic interval37 558-40 440 nt2 883 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 558-40 440 ntGCF_034143205::NZ_JAWZCP010000084.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000084.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000084.1All displayed genes belong to this local TCS context.
Neighborhood span37 558-40 440 nt2 883 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 558 nt40 440 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E70_RS06105GCF_034143205#U0E70_RS06105
HKHybridCurrent focus
37 558-40 440 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS05305Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0318133
Simplified PFAM architecture for HKOC_0318133
PFAM domain coverage: 519 / 960 aa (54.1%)
1 aa960 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[285-487] | HisKA[557-623] | HATPase_c[669-803] | Response_reg[830-943]
- Domain count: 4
- Matched identifier: HKOC_0318133
- Positioned domains: SBP_bac_3 285-487 ; HisKA 557-623 ; HATPase_c 669-803 ; Response_reg 830-943
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS05305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key