1 dCache_1#1
32-265 aa · 234 aa · 39.8% of protein
Raw token
dCache_1:32:0.000000323:265:241:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS04500
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength588 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS04500Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length588 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage493 / 588 aa (83.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa588 aa
Domain-by-domain annotation4 items
2 HAMP#2
282-351 aa · 70 aa · 11.9% of protein
Raw token
HAMP:282:0.0000000000000081:351:70:693 His_kinase#3
373-452 aa · 80 aa · 13.6% of protein
Raw token
His_kinase:373:1.67e-26:452:80:804 HATPase_c#4
471-579 aa · 109 aa · 18.5% of protein
Raw token
HATPase_c:471:0.00000000031:579:111:109- Raw architecture: dCache_1:32:0.000000323:265:241:195#HAMP:282:0.0000000000000081:351:70:69#His_kinase:373:1.67e-26:452:80:80#HATPase_c:471:0.00000000031:579:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000057.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15389-17985Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000057.1::G00028Context members
U0E70_RS04495U0E70_RS04500
Partner locus tags
U0E70_RS04495U0E70_RS04500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117633475.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NXJ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NXJ8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS04500Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000057.1Sequence record reported by the local genomic context database.
Genomic interval16 219-17 985 nt1 767 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 389-17 985 ntGCF_034143205::NZ_JAWZCP010000057.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000057.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000057.1All displayed genes belong to this local TCS context.
Neighborhood span15 389-17 985 nt2 597 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 389 nt17 985 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS04495GCF_034143205#U0E70_RS04495
RRunclassified
15 389-16 222 nt · Reverse (-)
U0E70_RS04500GCF_034143205#U0E70_RS04500
HKClassicCurrent focus
16 219-17 985 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS30710Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1121367
Simplified PFAM architecture for HKOC_1121367
PFAM domain coverage: 242 / 588 aa (41.2%)
1 aa588 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[300-351] | His_kinase[373-452] | HATPase_c[471-580]
- Domain count: 3
- Matched identifier: HKOC_1121367
- Positioned domains: HAMP 300-351 ; His_kinase 373-452 ; HATPase_c 471-580
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS30710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key