1 Response_reg#1
4-117 aa · 114 aa · 41.2% of protein
Raw token
Response_reg:4:3.91e-30:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS04495
Response regulator, unclassified
Hungatella effluvii · GCF_034143205
ClassRRTypeunclassifiedLength277 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS04495Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length277 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 277 aa (69.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa277 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
183-224 aa · 42 aa · 15.2% of protein
Raw token
HTH_AraC:183:0.000000167:224:42:423 HTH_AraC#3
239-274 aa · 36 aa · 13.0% of protein
Raw token
HTH_AraC:239:0.00000258:274:36:42- Raw architecture: Response_reg:4:3.91e-30:117:114:111#HTH_AraC:183:0.000000167:224:42:42#HTH_AraC:239:0.00000258:274:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000057.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15389-17985Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000057.1::G00028Context members
U0E70_RS04495U0E70_RS04500
Partner locus tags
U0E70_RS04495U0E70_RS04500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320932882.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS04495Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000057.1Sequence record reported by the local genomic context database.
Genomic interval15 389-16 222 nt834 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 389-17 985 ntGCF_034143205::NZ_JAWZCP010000057.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000057.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000057.1All displayed genes belong to this local TCS context.
Neighborhood span15 389-17 985 nt2 597 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 389 nt17 985 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS04495GCF_034143205#U0E70_RS04495
RRunclassifiedCurrent focus
15 389-16 222 nt · Reverse (-)
U0E70_RS04500GCF_034143205#U0E70_RS04500
HKClassic
16 219-17 985 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS09965Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0602339
Simplified PFAM architecture for RROC_0602339
PFAM domain coverage: 193 / 277 aa (69.7%)
1 aa277 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[196-274]
- Domain count: 2
- Matched identifier: RROC_0602339
- Positioned domains: Response_reg 4-117 ; HTH_18 196-274
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS09965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key