1 HAMP#1
276-341 aa · 66 aa · 11.6% of protein
Raw token
HAMP:276:0.00000397:341:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS04065
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength567 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034143205#U0E70_RS04065Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length567 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 567 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa567 aa
Domain-by-domain annotation3 items
2 His_kinase#2
359-437 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:359:4.52e-26:437:81:803 HATPase_c#3
460-561 aa · 102 aa · 18.0% of protein
Raw token
HATPase_c:460:0.00000000000000527:561:102:109- Raw architecture: HAMP:276:0.00000397:341:67:69#His_kinase:359:4.52e-26:437:81:80#HATPase_c:460:0.00000000000000527:561:102:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034143205::NZ_JAWZCP010000053.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span110490-112193Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000053.1::G00023Context members
U0E70_RS04065
Partner locus tags
U0E70_RS04065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002602527.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS04065Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000053.1Sequence record reported by the local genomic context database.
Genomic interval110 490-112 193 nt1 704 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span110 490-112 193 ntGCF_034143205::NZ_JAWZCP010000053.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000053.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000053.1All displayed genes belong to this local TCS context.
Neighborhood span110 490-112 193 nt1 704 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 490 nt112 193 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E70_RS04065GCF_034143205#U0E70_RS04065
HKClassicCurrent focus
110 490-112 193 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS13715Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1224964
Simplified PFAM architecture for HKOC_1224964
PFAM domain coverage: 186 / 567 aa (32.8%)
1 aa567 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[359-437] | HATPase_c[456-562]
- Domain count: 2
- Matched identifier: HKOC_1224964
- Positioned domains: His_kinase 359-437 ; HATPase_c 456-562
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS13715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key