1 Response_reg#1
4-118 aa · 115 aa · 21.5% of protein
Raw token
Response_reg:4:2.37e-31:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS03420
Response regulator, unclassified
Hungatella effluvii · GCF_034143205
ClassRRTypeunclassifiedLength536 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034143205#U0E70_RS03420Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length536 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 536 aa (29.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa536 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
435-476 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:435:0.00000143:476:42:42- Raw architecture: Response_reg:4:2.37e-31:118:115:111#HTH_AraC:435:0.00000143:476:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034143205::NZ_JAWZCP010000050.1::G00018
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span10277-16089Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000050.1::G00018Context members
U0E70_RS03405U0E70_RS03410U0E70_RS03415U0E70_RS03420
Partner locus tags
U0E70_RS03405U0E70_RS03410U0E70_RS03415U0E70_RS03420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029465391.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DGH7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DGH7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS03420Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000050.1Sequence record reported by the local genomic context database.
Genomic interval14 479-16 089 nt1 611 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 277-16 089 ntGCF_034143205::NZ_JAWZCP010000050.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000050.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000050.1All displayed genes belong to this local TCS context.
Neighborhood span10 277-16 089 nt5 813 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 277 nt16 089 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0E70_RS03405GCF_034143205#U0E70_RS03405
HKClassic
10 277-11 026 nt · Forward (+)
U0E70_RS03410GCF_034143205#U0E70_RS03410
RRunclassified
11 004-12 488 nt · Forward (+)
U0E70_RS03415GCF_034143205#U0E70_RS03415
HKClassic
12 645-14 477 nt · Forward (+)
U0E70_RS03420GCF_034143205#U0E70_RS03420
RRunclassifiedCurrent focus
14 479-16 089 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS22875Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0098848
Simplified PFAM architecture for RROC_0098848
PFAM domain coverage: 193 / 536 aa (36.0%)
1 aa536 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[449-527]
- Domain count: 2
- Matched identifier: RROC_0098848
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 449-527 ; HTH_18 449-527
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS22875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key