1 HAMP#1
304-373 aa · 70 aa · 11.5% of protein
Raw token
HAMP:304:0.0000000618:373:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS03415
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034143205#U0E70_RS03415Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 610 aa (41.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa610 aa
Domain-by-domain annotation3 items
2 His_kinase#2
395-474 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:395:5.48e-32:474:80:803 HATPase_c#3
500-600 aa · 101 aa · 16.6% of protein
Raw token
HATPase_c:500:0.000000000128:600:101:109- Raw architecture: HAMP:304:0.0000000618:373:70:69#His_kinase:395:5.48e-32:474:80:80#HATPase_c:500:0.000000000128:600:101:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034143205::NZ_JAWZCP010000050.1::G00018
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span10277-16089Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000050.1::G00018Context members
U0E70_RS03405U0E70_RS03410U0E70_RS03415U0E70_RS03420
Partner locus tags
U0E70_RS03405U0E70_RS03410U0E70_RS03415U0E70_RS03420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_051364645.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DGI2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DGI2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS03415Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000050.1Sequence record reported by the local genomic context database.
Genomic interval12 645-14 477 nt1 833 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 277-16 089 ntGCF_034143205::NZ_JAWZCP010000050.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000050.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000050.1All displayed genes belong to this local TCS context.
Neighborhood span10 277-16 089 nt5 813 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 277 nt16 089 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0E70_RS03405GCF_034143205#U0E70_RS03405
HKClassic
10 277-11 026 nt · Forward (+)
U0E70_RS03410GCF_034143205#U0E70_RS03410
RRunclassified
11 004-12 488 nt · Forward (+)
U0E70_RS03415GCF_034143205#U0E70_RS03415
HKClassicCurrent focus
12 645-14 477 nt · Forward (+)
U0E70_RS03420GCF_034143205#U0E70_RS03420
RRunclassified
14 479-16 089 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS22870Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1005565
Simplified PFAM architecture for HKOC_1005565
PFAM domain coverage: 183 / 610 aa (30.0%)
1 aa610 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[395-474] | HATPase_c[498-600]
- Domain count: 2
- Matched identifier: HKOC_1005565
- Positioned domains: His_kinase 395-474 ; HATPase_c 498-600
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS22870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key