1 Response_reg#1
4-117 aa · 114 aa · 23.1% of protein
Raw token
Response_reg:4:1.82e-27:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS03410
Response regulator, unclassified
Hungatella effluvii · GCF_034143205
ClassRRTypeunclassifiedLength494 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034143205#U0E70_RS03410Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length494 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 494 aa (38.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa494 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
396-436 aa · 41 aa · 8.3% of protein
Raw token
HTH_AraC:396:0.000000348:436:41:423 HTH_AraC#3
451-486 aa · 36 aa · 7.3% of protein
Raw token
HTH_AraC:451:0.000000000012:486:36:42- Raw architecture: Response_reg:4:1.82e-27:117:114:111#HTH_AraC:396:0.000000348:436:41:42#HTH_AraC:451:0.000000000012:486:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034143205::NZ_JAWZCP010000050.1::G00018
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span10277-16089Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000050.1::G00018Context members
U0E70_RS03405U0E70_RS03410U0E70_RS03415U0E70_RS03420
Partner locus tags
U0E70_RS03405U0E70_RS03410U0E70_RS03415U0E70_RS03420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025530211.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DGE0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DGE0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS03410Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000050.1Sequence record reported by the local genomic context database.
Genomic interval11 004-12 488 nt1 485 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 277-16 089 ntGCF_034143205::NZ_JAWZCP010000050.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000050.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000050.1All displayed genes belong to this local TCS context.
Neighborhood span10 277-16 089 nt5 813 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 277 nt16 089 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0E70_RS03405GCF_034143205#U0E70_RS03405
HKClassic
10 277-11 026 nt · Forward (+)
U0E70_RS03410GCF_034143205#U0E70_RS03410
RRunclassifiedCurrent focus
11 004-12 488 nt · Forward (+)
U0E70_RS03415GCF_034143205#U0E70_RS03415
HKClassic
12 645-14 477 nt · Forward (+)
U0E70_RS03420GCF_034143205#U0E70_RS03420
RRunclassified
14 479-16 089 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS22865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0164779
Simplified PFAM architecture for RROC_0164779
PFAM domain coverage: 192 / 494 aa (38.9%)
1 aa494 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[409-487]
- Domain count: 2
- Matched identifier: RROC_0164779
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 409-487 ; HTH_18 409-487
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS22865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key