1 His_kinase#1
17-95 aa · 79 aa · 31.7% of protein
Raw token
His_kinase:17:6.31e-28:95:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS03405
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength249 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034143205#U0E70_RS03405Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage195 / 249 aa (78.3%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
111-226 aa · 116 aa · 46.6% of protein
Raw token
HATPase_c:111:0.00000000000647:226:118:109- Raw architecture: His_kinase:17:6.31e-28:95:80:80#HATPase_c:111:0.00000000000647:226:118:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034143205::NZ_JAWZCP010000050.1::G00018
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span10277-16089Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000050.1::G00018Context members
U0E70_RS03405U0E70_RS03410U0E70_RS03415U0E70_RS03420
Partner locus tags
U0E70_RS03405U0E70_RS03410U0E70_RS03415U0E70_RS03420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025530210.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS03405Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000050.1Sequence record reported by the local genomic context database.
Genomic interval10 277-11 026 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 277-16 089 ntGCF_034143205::NZ_JAWZCP010000050.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000050.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000050.1All displayed genes belong to this local TCS context.
Neighborhood span10 277-16 089 nt5 813 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 277 nt16 089 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0E70_RS03405GCF_034143205#U0E70_RS03405
HKClassicCurrent focus
10 277-11 026 nt · Forward (+)
U0E70_RS03410GCF_034143205#U0E70_RS03410
RRunclassified
11 004-12 488 nt · Forward (+)
U0E70_RS03415GCF_034143205#U0E70_RS03415
HKClassic
12 645-14 477 nt · Forward (+)
U0E70_RS03420GCF_034143205#U0E70_RS03420
RRunclassified
14 479-16 089 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS22860Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2919489
Simplified PFAM architecture for HKOC_2919489
PFAM domain coverage: 193 / 249 aa (77.5%)
1 aa249 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[17-95] | HATPase_c[111-224]
- Domain count: 2
- Matched identifier: HKOC_2919489
- Positioned domains: His_kinase 17-95 ; HATPase_c 111-224
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS22860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key