1 Response_reg#1
6-114 aa · 109 aa · 20.7% of protein
Raw token
Response_reg:6:1.53e-28:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS02340
Response regulator, unclassified
Hungatella effluvii · GCF_034143205
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS02340Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 527 aa (26.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
492-524 aa · 33 aa · 6.3% of protein
Raw token
HTH_AraC:492:0.0000000239:524:33:42- Raw architecture: Response_reg:6:1.53e-28:114:109:111#HTH_AraC:492:0.0000000239:524:33:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000032.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1089-4447Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000032.1::G00014Context members
U0E70_RS02340U0E70_RS02345
Partner locus tags
U0E70_RS02340U0E70_RS02345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002601567.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NZD7Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NZD7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS02340Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000032.1Sequence record reported by the local genomic context database.
Genomic interval1 089-2 672 nt1 584 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 089-4 447 ntGCF_034143205::NZ_JAWZCP010000032.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000032.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000032.1All displayed genes belong to this local TCS context.
Neighborhood span1 089-4 447 nt3 359 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 089 nt4 447 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS02340GCF_034143205#U0E70_RS02340
RRunclassifiedCurrent focus
1 089-2 672 nt · Reverse (-)
U0E70_RS02345GCF_034143205#U0E70_RS02345
HKClassic
2 687-4 447 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS08820Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0115880
Simplified PFAM architecture for RROC_0115880
PFAM domain coverage: 189 / 527 aa (35.9%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-117] | HTH_18[449-525]
- Domain count: 2
- Matched identifier: RROC_0115880
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; HTH_18 449-525 ; HTH_18 449-525
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS08820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key