1 HAMP#1
318-381 aa · 64 aa · 10.6% of protein
Raw token
HAMP:318:0.000000000984:381:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E70_RS01685
Histidine kinase, Classic
Hungatella effluvii · GCF_034143205
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034143205#U0E70_RS01685Stable P2CS identifier used across views.
GenomeGCF_034143205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 605 aa (38.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation3 items
2 His_kinase#2
401-475 aa · 75 aa · 12.4% of protein
Raw token
His_kinase:401:7.51e-26:475:75:803 HATPase_c#3
496-591 aa · 96 aa · 15.9% of protein
Raw token
HATPase_c:496:0.00000000000414:591:110:109- Raw architecture: HAMP:318:0.000000000984:381:64:69#His_kinase:401:7.51e-26:475:75:80#HATPase_c:496:0.00000000000414:591:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034143205::NZ_JAWZCP010000025.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2591-5206Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034143205::NZ_JAWZCP010000025.1::G00009Context members
U0E70_RS01685U0E70_RS01690
Partner locus tags
U0E70_RS01685U0E70_RS01690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321007912.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E70_RS01685Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZCP010000025.1Sequence record reported by the local genomic context database.
Genomic interval2 591-4 408 nt1 818 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 591-5 206 ntGCF_034143205::NZ_JAWZCP010000025.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034143205::NZ_JAWZCP010000025.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZCP010000025.1All displayed genes belong to this local TCS context.
Neighborhood span2 591-5 206 nt2 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 591 nt5 206 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E70_RS01685GCF_034143205#U0E70_RS01685
HKClassicCurrent focus
2 591-4 408 nt · Forward (+)
U0E70_RS01690GCF_034143205#U0E70_RS01690
RRunclassified
4 386-5 206 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS27770Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1031259
Simplified PFAM architecture for HKOC_1031259
PFAM domain coverage: 216 / 605 aa (35.7%)
1 aa605 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[339-383] | His_kinase[402-476] | HATPase_c[496-591]
- Domain count: 3
- Matched identifier: HKOC_1031259
- Positioned domains: HAMP 339-383 ; His_kinase 402-476 ; HATPase_c 496-591
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS27770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034143205
AssemblyASM3414320v1 · Scaffoldhaploid
Genome composition6 987 739 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 295 · HK 138 · RR 147CheA 1 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key