1 Response_reg#1
5-115 aa · 111 aa · 22.0% of protein
Raw token
Response_reg:5:2.59e-27:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C29_RS21020
Response regulator, unclassified
Hungatella effluvii · GCF_034129085
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034129085#U0C29_RS21020Stable P2CS identifier used across views.
GenomeGCF_034129085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 505 aa (29.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
459-496 aa · 38 aa · 7.5% of protein
Raw token
HTH_AraC:459:0.0000000475:496:38:42- Raw architecture: Response_reg:5:2.59e-27:115:111:111#HTH_AraC:459:0.0000000475:496:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034129085::NZ_JAWYNG010000473.1::G00110
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span380-3762Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034129085::NZ_JAWYNG010000473.1::G00110Context members
U0C29_RS21020U0C29_RS21025
Partner locus tags
U0C29_RS21020U0C29_RS21025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320933792.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C29_RS21020Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYNG010000473.1Sequence record reported by the local genomic context database.
Genomic interval380-1 897 nt1 518 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span380-3 762 ntGCF_034129085::NZ_JAWYNG010000473.1::G00110
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034129085::NZ_JAWYNG010000473.1::G00110Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYNG010000473.1All displayed genes belong to this local TCS context.
Neighborhood span380-3 762 nt3 383 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
380 nt3 762 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C29_RS21020GCF_034129085#U0C29_RS21020
RRunclassifiedCurrent focus
380-1 897 nt · Forward (+)
U0C29_RS21025GCF_034129085#U0C29_RS21025
HKClassic
1 894-3 762 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS21020The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0153249
Simplified PFAM architecture for RROC_0153249
PFAM domain coverage: 189 / 505 aa (37.4%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[420-497]
- Domain count: 2
- Matched identifier: RROC_0153249
- Positioned domains: Response_reg 5-115 ; HTH_18 420-497
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS21020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034129085
AssemblyASM3412908v1 · Scaffoldhaploid
Genome composition7 121 632 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 289 · HK 136 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key