1 Response_reg#1
6-118 aa · 113 aa · 21.3% of protein
Raw token
Response_reg:6:3.94e-27:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C29_RS10055
Response regulator, unclassified
Hungatella effluvii · GCF_034129085
ClassRRTypeunclassifiedLength530 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034129085#U0C29_RS10055Stable P2CS identifier used across views.
GenomeGCF_034129085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 530 aa (28.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
491-527 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:491:0.000000099:527:37:42- Raw architecture: Response_reg:6:3.94e-27:118:113:111#HTH_AraC:491:0.000000099:527:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034129085::NZ_JAWYNG010000220.1::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span280-1872Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034129085::NZ_JAWYNG010000220.1::G00045Context members
U0C29_RS10055
Partner locus tags
U0C29_RS10055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320932889.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C29_RS10055Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYNG010000220.1Sequence record reported by the local genomic context database.
Genomic interval280-1 872 nt1 593 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span280-1 872 ntGCF_034129085::NZ_JAWYNG010000220.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034129085::NZ_JAWYNG010000220.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYNG010000220.1All displayed genes belong to this local TCS context.
Neighborhood span280-1 872 nt1 593 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
280 nt1 872 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0C29_RS10055GCF_034129085#U0C29_RS10055
RRunclassifiedCurrent focus
280-1 872 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS10055The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0112287
Simplified PFAM architecture for RROC_0112287
PFAM domain coverage: 260 / 530 aa (49.1%)
1 aa530 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-117] | GGDEF_2[221-289] | HTH_18[449-527]
- Domain count: 3
- Matched identifier: RROC_0112287
- Positioned domains: Response_reg 6-117 ; GGDEF_2 221-289 ; HTH_18 449-527
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS10055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034129085
AssemblyASM3412908v1 · Scaffoldhaploid
Genome composition7 121 632 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 289 · HK 136 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key