1 HAMP#1
321-393 aa · 73 aa · 11.9% of protein
Raw token
HAMP:321:0.000000000000618:393:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C29_RS05340
Histidine kinase, Classic
Hungatella effluvii · GCF_034129085
ClassHKTypeClassicLength613 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034129085#U0C29_RS05340Stable P2CS identifier used across views.
GenomeGCF_034129085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length613 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 613 aa (41.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa613 aa
Domain-by-domain annotation3 items
2 His_kinase#2
408-483 aa · 76 aa · 12.4% of protein
Raw token
His_kinase:408:1.89e-31:483:76:803 HATPase_c#3
503-610 aa · 108 aa · 17.6% of protein
Raw token
HATPase_c:503:0.0000000000000972:610:111:109- Raw architecture: HAMP:321:0.000000000000618:393:73:69#His_kinase:408:1.89e-31:483:76:80#HATPase_c:503:0.0000000000000972:610:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034129085::NZ_JAWYNG010000113.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11264-14720Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034129085::NZ_JAWYNG010000113.1::G00025Context members
U0C29_RS05335U0C29_RS05340
Partner locus tags
U0C29_RS05335U0C29_RS05340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320932494.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C29_RS05340Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYNG010000113.1Sequence record reported by the local genomic context database.
Genomic interval12 879-14 720 nt1 842 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 264-14 720 ntGCF_034129085::NZ_JAWYNG010000113.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034129085::NZ_JAWYNG010000113.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYNG010000113.1All displayed genes belong to this local TCS context.
Neighborhood span11 264-14 720 nt3 457 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 264 nt14 720 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C29_RS05335GCF_034129085#U0C29_RS05335
RRunclassified
11 264-12 820 nt · Reverse (-)
U0C29_RS05340GCF_034129085#U0C29_RS05340
HKClassicCurrent focus
12 879-14 720 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS05340The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0996322
Simplified PFAM architecture for HKOC_0996322
PFAM domain coverage: 234 / 613 aa (38.2%)
1 aa613 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[344-392] | His_kinase[409-484] | HATPase_c[502-610]
- Domain count: 3
- Matched identifier: HKOC_0996322
- Positioned domains: HAMP 344-392 ; His_kinase 409-484 ; HATPase_c 502-610
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS05340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034129085
AssemblyASM3412908v1 · Scaffoldhaploid
Genome composition7 121 632 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 289 · HK 136 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key