1 Response_reg#1
4-117 aa · 114 aa · 22.0% of protein
Raw token
Response_reg:4:7.04e-28:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C29_RS05335
Response regulator, unclassified
Hungatella effluvii · GCF_034129085
ClassRRTypeunclassifiedLength518 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034129085#U0C29_RS05335Stable P2CS identifier used across views.
GenomeGCF_034129085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length518 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 518 aa (37.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa518 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
425-466 aa · 42 aa · 8.1% of protein
Raw token
HTH_AraC:425:0.00000000193:466:42:423 HTH_AraC#3
479-514 aa · 36 aa · 6.9% of protein
Raw token
HTH_AraC:479:0.00000132:514:36:42- Raw architecture: Response_reg:4:7.04e-28:117:114:111#HTH_AraC:425:0.00000000193:466:42:42#HTH_AraC:479:0.00000132:514:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034129085::NZ_JAWYNG010000113.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11264-14720Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034129085::NZ_JAWYNG010000113.1::G00025Context members
U0C29_RS05335U0C29_RS05340
Partner locus tags
U0C29_RS05335U0C29_RS05340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_156834815.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3I6J3Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3I6J3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C29_RS05335Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYNG010000113.1Sequence record reported by the local genomic context database.
Genomic interval11 264-12 820 nt1 557 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 264-14 720 ntGCF_034129085::NZ_JAWYNG010000113.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034129085::NZ_JAWYNG010000113.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYNG010000113.1All displayed genes belong to this local TCS context.
Neighborhood span11 264-14 720 nt3 457 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 264 nt14 720 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C29_RS05335GCF_034129085#U0C29_RS05335
RRunclassifiedCurrent focus
11 264-12 820 nt · Reverse (-)
U0C29_RS05340GCF_034129085#U0C29_RS05340
HKClassic
12 879-14 720 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034121375#U0F56_RS10615Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0130340
Simplified PFAM architecture for RROC_0130340
PFAM domain coverage: 191 / 518 aa (36.9%)
1 aa518 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[439-516]
- Domain count: 2
- Matched identifier: RROC_0130340
- Positioned domains: Response_reg 4-116 ; HTH_18 439-516
Cluster members and taxonomy
Representative gene: GCF_034121375#U0F56_RS10615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034129085
AssemblyASM3412908v1 · Scaffoldhaploid
Genome composition7 121 632 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 289 · HK 136 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key