1 Response_reg#1
5-105 aa · 101 aa · 20.4% of protein
Raw token
Response_reg:5:2.51e-32:105:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C29_RS03160
Response regulator, unclassified
Hungatella effluvii · GCF_034129085
ClassRRTypeunclassifiedLength496 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_034129085#U0C29_RS03160Stable P2CS identifier used across views.
GenomeGCF_034129085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage177 / 496 aa (35.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
402-443 aa · 42 aa · 8.5% of protein
Raw token
HTH_AraC:402:0.00000041:443:42:423 HTH_AraC#3
460-493 aa · 34 aa · 6.9% of protein
Raw token
HTH_AraC:460:0.0000000473:493:34:42- Raw architecture: Response_reg:5:2.51e-32:105:101:111#HTH_AraC:402:0.00000041:443:42:42#HTH_AraC:460:0.0000000473:493:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_034129085::NZ_JAWYNG010000078.1::G00013
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span2999-8065Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034129085::NZ_JAWYNG010000078.1::G00013Context members
U0C29_RS03155U0C29_RS03160U0C29_RS03165
Partner locus tags
U0C29_RS03155U0C29_RS03160U0C29_RS03165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630270.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PDM3Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PDM3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C29_RS03160Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYNG010000078.1Sequence record reported by the local genomic context database.
Genomic interval4 768-6 258 nt1 491 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 999-8 065 ntGCF_034129085::NZ_JAWYNG010000078.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034129085::NZ_JAWYNG010000078.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYNG010000078.1All displayed genes belong to this local TCS context.
Neighborhood span2 999-8 065 nt5 067 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 999 nt8 065 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
U0C29_RS03155GCF_034129085#U0C29_RS03155
HKClassic
2 999-4 783 nt · Forward (+)
U0C29_RS03160GCF_034129085#U0C29_RS03160
RRunclassifiedCurrent focus
4 768-6 258 nt · Forward (+)
U0C29_RS03165GCF_034129085#U0C29_RS03165
HKClassic
6 551-8 065 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS01970Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0162536
Simplified PFAM architecture for RROC_0162536
PFAM domain coverage: 181 / 496 aa (36.5%)
1 aa496 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-107] | HTH_18[415-492]
- Domain count: 2
- Matched identifier: RROC_0162536
- Positioned domains: Response_reg 5-107 ; Response_reg 5-107 ; HTH_18 415-492 ; HTH_18 415-492
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS01970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034129085
AssemblyASM3412908v1 · Scaffoldhaploid
Genome composition7 121 632 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 289 · HK 136 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key