1 Response_reg#1
4-118 aa · 115 aa · 23.0% of protein
Raw token
Response_reg:4:3.29e-25:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C29_RS01740
Response regulator, unclassified
Hungatella effluvii · GCF_034129085
ClassRRTypeunclassifiedLength500 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034129085#U0C29_RS01740Stable P2CS identifier used across views.
GenomeGCF_034129085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 500 aa (38.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa500 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
407-448 aa · 42 aa · 8.4% of protein
Raw token
HTH_AraC:407:0.00000018:448:42:423 HTH_AraC#3
462-498 aa · 37 aa · 7.4% of protein
Raw token
HTH_AraC:462:0.000000249:498:37:42- Raw architecture: Response_reg:4:3.29e-25:118:115:111#HTH_AraC:407:0.00000018:448:42:42#HTH_AraC:462:0.000000249:498:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034129085::NZ_JAWYNG010000034.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span505-2007Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034129085::NZ_JAWYNG010000034.1::G00009Context members
U0C29_RS01740
Partner locus tags
U0C29_RS01740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320932223.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C29_RS01740Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYNG010000034.1Sequence record reported by the local genomic context database.
Genomic interval505-2 007 nt1 503 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span505-2 007 ntGCF_034129085::NZ_JAWYNG010000034.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034129085::NZ_JAWYNG010000034.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYNG010000034.1All displayed genes belong to this local TCS context.
Neighborhood span505-2 007 nt1 503 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
505 nt2 007 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0C29_RS01740GCF_034129085#U0C29_RS01740
RRunclassifiedCurrent focus
505-2 007 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS01740The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0158715
Simplified PFAM architecture for RROC_0158715
PFAM domain coverage: 194 / 500 aa (38.8%)
1 aa500 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-117] | HTH_AraC[408-448] | HTH_AraC[460-498]
- Domain count: 3
- Matched identifier: RROC_0158715
- Positioned domains: Response_reg 4-117 ; HTH_AraC 408-448 ; HTH_AraC 460-498
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS01740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034129085
AssemblyASM3412908v1 · Scaffoldhaploid
Genome composition7 121 632 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 289 · HK 136 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key