1 Response_reg#1
5-117 aa · 113 aa · 23.3% of protein
Raw token
Response_reg:5:2.9e-30:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C29_RS01690
Response regulator, unclassified
Hungatella effluvii · GCF_034129085
ClassRRTypeunclassifiedLength484 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034129085#U0C29_RS01690Stable P2CS identifier used across views.
GenomeGCF_034129085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 484 aa (40.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
387-428 aa · 42 aa · 8.7% of protein
Raw token
HTH_AraC:387:0.0000136:428:42:423 HTH_AraC#3
440-478 aa · 39 aa · 8.1% of protein
Raw token
HTH_AraC:440:0.00000235:478:39:42- Raw architecture: Response_reg:5:2.9e-30:117:113:111#HTH_AraC:387:0.0000136:428:42:42#HTH_AraC:440:0.00000235:478:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034129085::NZ_JAWYNG010000033.1::G00007
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span4730-10339Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034129085::NZ_JAWYNG010000033.1::G00007Context members
U0C29_RS01675U0C29_RS01680U0C29_RS01690U0C29_RS01695
Partner locus tags
U0C29_RS01675U0C29_RS01680U0C29_RS01690U0C29_RS01695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320932217.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C29_RS01690Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYNG010000033.1Sequence record reported by the local genomic context database.
Genomic interval7 029-8 483 nt1 455 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 730-10 339 ntGCF_034129085::NZ_JAWYNG010000033.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034129085::NZ_JAWYNG010000033.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYNG010000033.1All displayed genes belong to this local TCS context.
Neighborhood span4 730-10 339 nt5 610 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 730 nt10 339 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0C29_RS01675GCF_034129085#U0C29_RS01675
RRCheY
4 730-5 149 nt · Reverse (-)
U0C29_RS01680GCF_034129085#U0C29_RS01680
HKClassic
5 273-6 766 nt · Reverse (-)
U0C29_RS01690GCF_034129085#U0C29_RS01690
RRunclassifiedCurrent focus
7 029-8 483 nt · Reverse (-)
U0C29_RS01695GCF_034129085#U0C29_RS01695
HKClassic
8 498-10 339 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS01690The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0176728
Simplified PFAM architecture for RROC_0176728
PFAM domain coverage: 190 / 484 aa (39.3%)
1 aa484 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[401-478]
- Domain count: 2
- Matched identifier: RROC_0176728
- Positioned domains: Response_reg 5-116 ; HTH_18 401-478
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS01690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034129085
AssemblyASM3412908v1 · Scaffoldhaploid
Genome composition7 121 632 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 289 · HK 136 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key