1 Response_reg#1
4-113 aa · 110 aa · 78.6% of protein
Raw token
Response_reg:4:7.3e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C29_RS01675
Response regulator, CheY family
Hungatella effluvii · GCF_034129085
ClassRRTypeCheYLength140 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034129085#U0C29_RS01675Stable P2CS identifier used across views.
GenomeGCF_034129085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length140 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 140 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa140 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:7.3e-30:113:110:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034129085::NZ_JAWYNG010000033.1::G00007
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span4730-10339Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034129085::NZ_JAWYNG010000033.1::G00007Context members
U0C29_RS01675U0C29_RS01680U0C29_RS01690U0C29_RS01695
Partner locus tags
U0C29_RS01675U0C29_RS01680U0C29_RS01690U0C29_RS01695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320932216.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C29_RS01675Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYNG010000033.1Sequence record reported by the local genomic context database.
Genomic interval4 730-5 149 nt420 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 730-10 339 ntGCF_034129085::NZ_JAWYNG010000033.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034129085::NZ_JAWYNG010000033.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYNG010000033.1All displayed genes belong to this local TCS context.
Neighborhood span4 730-10 339 nt5 610 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 730 nt10 339 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0C29_RS01675GCF_034129085#U0C29_RS01675
RRCheYCurrent focus
4 730-5 149 nt · Reverse (-)
U0C29_RS01680GCF_034129085#U0C29_RS01680
HKClassic
5 273-6 766 nt · Reverse (-)
U0C29_RS01690GCF_034129085#U0C29_RS01690
RRunclassified
7 029-8 483 nt · Reverse (-)
U0C29_RS01695GCF_034129085#U0C29_RS01695
HKClassic
8 498-10 339 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS23100Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0577292
Simplified PFAM architecture for RROC_0577292
PFAM domain coverage: 188 / 298 aa (63.1%)
1 aa298 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[217-294]
- Domain count: 2
- Matched identifier: RROC_0577292
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; HTH_18 217-294 ; HTH_18 217-294
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS23100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034129085
AssemblyASM3412908v1 · Scaffoldhaploid
Genome composition7 121 632 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 289 · HK 136 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key