1 HAMP#1
300-369 aa · 70 aa · 11.8% of protein
Raw token
HAMP:300:0.000000000498:369:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C29_RS00760
Histidine kinase, Classic
Hungatella effluvii · GCF_034129085
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034129085#U0C29_RS00760Stable P2CS identifier used across views.
GenomeGCF_034129085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage264 / 595 aa (44.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation3 items
2 His_kinase#2
384-462 aa · 79 aa · 13.3% of protein
Raw token
His_kinase:384:3.81e-26:462:80:803 HATPase_c#3
478-592 aa · 115 aa · 19.3% of protein
Raw token
HATPase_c:478:0.00000000000107:592:115:109- Raw architecture: HAMP:300:0.000000000498:369:71:69#His_kinase:384:3.81e-26:462:80:80#HATPase_c:478:0.00000000000107:592:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034129085::NZ_JAWYNG010000017.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16772-20050Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034129085::NZ_JAWYNG010000017.1::G00003Context members
U0C29_RS00760U0C29_RS00765
Partner locus tags
U0C29_RS00760U0C29_RS00765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320932136.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C29_RS00760Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYNG010000017.1Sequence record reported by the local genomic context database.
Genomic interval16 772-18 559 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 772-20 050 ntGCF_034129085::NZ_JAWYNG010000017.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034129085::NZ_JAWYNG010000017.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYNG010000017.1All displayed genes belong to this local TCS context.
Neighborhood span16 772-20 050 nt3 279 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 772 nt20 050 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C29_RS00760GCF_034129085#U0C29_RS00760
HKClassicCurrent focus
16 772-18 559 nt · Forward (+)
U0C29_RS00765GCF_034129085#U0C29_RS00765
RRunclassified
18 575-20 050 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS00760The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1085113
Simplified PFAM architecture for HKOC_1085113
PFAM domain coverage: 240 / 595 aa (40.3%)
1 aa595 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[320-368] | His_kinase[384-460] | HATPase_c[478-591]
- Domain count: 3
- Matched identifier: HKOC_1085113
- Positioned domains: HAMP 320-368 ; His_kinase 384-460 ; HATPase_c 478-591
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS00760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034129085
AssemblyASM3412908v1 · Scaffoldhaploid
Genome composition7 121 632 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 289 · HK 136 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key