1 PAS_3#1
209-291 aa · 83 aa · 7.4% of protein
Raw token
PAS_3:209:0.000000000000294:291:83:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C47_RS05430
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034126565
ClassHKTypeHybridLength1118 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034126565#U0C47_RS05430Stable P2CS identifier used across views.
GenomeGCF_034126565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1118 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage519 / 1118 aa (46.4%)Merged over positioned domains only.
Domain description3 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1118 aa
Domain-by-domain annotation6 items
2 PAS_3#2
343-418 aa · 76 aa · 6.8% of protein
Raw token
PAS_3:343:0.000000449:418:78:893 PAS_3#3
500-557 aa · 58 aa · 5.2% of protein
Raw token
PAS_3:500:0.00000141:557:63:894 HisKA#4
734-800 aa · 67 aa · 6.0% of protein
Raw token
HisKA:734:8.68e-16:800:67:645 HATPase_c#5
847-961 aa · 115 aa · 10.3% of protein
Raw token
HATPase_c:847:5.93e-30:961:115:1096 Response_reg#6
993-1112 aa · 120 aa · 10.7% of protein
Raw token
Response_reg:993:1.29e-27:1112:120:111- Raw architecture: PAS_3:209:0.000000000000294:291:83:89#PAS_3:343:0.000000449:418:78:89#PAS_3:500:0.00000141:557:63:89#HisKA:734:8.68e-16:800:67:64#HATPase_c:847:5.93e-30:961:115:109#Response_reg:993:1.29e-27:1112:120:111
- Domain description: 3 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034126565::NZ_JAWYSC010000015.1::G00149
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span49917-53207Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126565::NZ_JAWYSC010000015.1::G00149Context members
U0C47_RS05430
Partner locus tags
U0C47_RS05430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117632235.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P8Q0Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P8Q0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C47_RS05430Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSC010000015.1Sequence record reported by the local genomic context database.
Genomic interval49 917-53 207 nt3 291 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 917-53 207 ntGCF_034126565::NZ_JAWYSC010000015.1::G00149
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126565::NZ_JAWYSC010000015.1::G00149Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSC010000015.1All displayed genes belong to this local TCS context.
Neighborhood span49 917-53 207 nt3 291 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 917 nt53 207 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0C47_RS05430GCF_034126565#U0C47_RS05430
HKHybridCurrent focus
49 917-53 207 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS15115Use this link to inspect the representative gene detail.
PFAM architectureSnoaL_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0223200
Simplified PFAM architecture for HKOC_0223200
PFAM domain coverage: 585 / 1118 aa (52.3%)
1 aa1118 aa
SnoaL_3PAS_3PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: SnoaL_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SnoaL_3[34-148] | PAS_3[210-291] | PAS_3[343-426] | HisKA[734-800] | HATPase_c[847-963] | Response_reg[993-1112]
- Domain count: 6
- Matched identifier: HKOC_0223200
- Positioned domains: SnoaL_3 34-148 ; PAS_3 210-291 ; PAS_3 343-426 ; HisKA 734-800 ; HATPase_c 847-963 ; Response_reg 993-1112
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS15115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126565
AssemblyASM3412656v1 · Scaffoldhaploid
Genome composition6 894 978 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 272 · HK 135 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key