1 HAMP#1
323-393 aa · 71 aa · 11.4% of protein
Raw token
HAMP:323:0.00000207:393:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C47_RS01305
Histidine kinase, Classic
Hungatella effluvii · GCF_034126565
ClassHKTypeClassicLength623 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034126565#U0C47_RS01305Stable P2CS identifier used across views.
GenomeGCF_034126565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length623 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 623 aa (41.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa623 aa
Domain-by-domain annotation3 items
2 His_kinase#2
408-485 aa · 78 aa · 12.5% of protein
Raw token
His_kinase:408:1.88e-31:485:78:803 HATPase_c#3
510-617 aa · 108 aa · 17.3% of protein
Raw token
HATPase_c:510:0.000000000000405:617:111:109- Raw architecture: HAMP:323:0.00000207:393:71:69#His_kinase:408:1.88e-31:485:78:80#HATPase_c:510:0.000000000000405:617:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034126565::NZ_JAWYSC010000006.1::G00137
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31619-35037Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126565::NZ_JAWYSC010000006.1::G00137Context members
U0C47_RS01300U0C47_RS01305
Partner locus tags
U0C47_RS01300U0C47_RS01305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002603167.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NYS6Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NYS6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C47_RS01305Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSC010000006.1Sequence record reported by the local genomic context database.
Genomic interval33 166-35 037 nt1 872 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 619-35 037 ntGCF_034126565::NZ_JAWYSC010000006.1::G00137
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126565::NZ_JAWYSC010000006.1::G00137Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSC010000006.1All displayed genes belong to this local TCS context.
Neighborhood span31 619-35 037 nt3 419 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 619 nt35 037 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C47_RS01300GCF_034126565#U0C47_RS01300
RRunclassified
31 619-33 169 nt · Forward (+)
U0C47_RS01305GCF_034126565#U0C47_RS01305
HKClassicCurrent focus
33 166-35 037 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS16880Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0964152
Simplified PFAM architecture for HKOC_0964152
PFAM domain coverage: 188 / 623 aa (30.2%)
1 aa623 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[408-485] | HATPase_c[507-616]
- Domain count: 2
- Matched identifier: HKOC_0964152
- Positioned domains: His_kinase 408-485 ; HATPase_c 507-616
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS16880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126565
AssemblyASM3412656v1 · Scaffoldhaploid
Genome composition6 894 978 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 272 · HK 135 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key