1 dCache_1#1
59-269 aa · 211 aa · 18.8% of protein
Raw token
dCache_1:59:0.0000959:269:212:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C47_RS04555
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034126565
ClassHKTypeHybridLength1120 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034126565#U0C47_RS04555Stable P2CS identifier used across views.
GenomeGCF_034126565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1PAS_3HisKAHATPase_cResponse_reg
Protein length1120 aaLength used to scale native and Biotite-like views.
Annotated domains77 with usable coordinates.
Domain coverage784 / 1120 aa (70.0%)Merged over positioned domains only.
Domain description1 dCache_1,2 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1120 aa
Domain-by-domain annotation7 items
2 PAS_3#2
348-434 aa · 87 aa · 7.8% of protein
Raw token
PAS_3:348:0.0000000127:434:88:893 PAS_3#3
495-561 aa · 67 aa · 6.0% of protein
Raw token
PAS_3:495:0.00000315:561:69:894 HisKA#4
603-669 aa · 67 aa · 6.0% of protein
Raw token
HisKA:603:8.42e-18:669:67:645 HATPase_c#5
716-833 aa · 118 aa · 10.5% of protein
Raw token
HATPase_c:716:4.92e-29:833:118:1096 Response_reg#6
852-967 aa · 116 aa · 10.4% of protein
Raw token
Response_reg:852:3.8e-19:967:118:1117 Response_reg#7
992-1109 aa · 118 aa · 10.5% of protein
Raw token
Response_reg:992:3.18e-29:1109:118:111- Raw architecture: dCache_1:59:0.0000959:269:212:195#PAS_3:348:0.0000000127:434:88:89#PAS_3:495:0.00000315:561:69:89#HisKA:603:8.42e-18:669:67:64#HATPase_c:716:4.92e-29:833:118:109#Response_reg:852:3.8e-19:967:118:111#Response_reg:992:3.18e-29:1109:118:111
- Domain description: 1 dCache_1,2 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034126565::NZ_JAWYSC010000012.1::G00082
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span178484-181846Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126565::NZ_JAWYSC010000012.1::G00082Context members
U0C47_RS04555
Partner locus tags
U0C47_RS04555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117621533.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NWZ4Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NWZ4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C47_RS04555Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSC010000012.1Sequence record reported by the local genomic context database.
Genomic interval178 484-181 846 nt3 363 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span178 484-181 846 ntGCF_034126565::NZ_JAWYSC010000012.1::G00082
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126565::NZ_JAWYSC010000012.1::G00082Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSC010000012.1All displayed genes belong to this local TCS context.
Neighborhood span178 484-181 846 nt3 363 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
178 484 nt181 846 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0C47_RS04555GCF_034126565#U0C47_RS04555
HKHybridCurrent focus
178 484-181 846 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS32085Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0221989
Simplified PFAM architecture for HKOC_0221989
PFAM domain coverage: 493 / 1120 aa (44.0%)
1 aa1120 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[353-431] | HisKA[603-669] | HATPase_c[716-833] | Response_reg[852-963] | Response_reg[992-1108]
- Domain count: 5
- Matched identifier: HKOC_0221989
- Positioned domains: PAS_3 353-431 ; HisKA 603-669 ; HATPase_c 716-833 ; Response_reg 852-963 ; Response_reg 992-1108
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS32085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126565
AssemblyASM3412656v1 · Scaffoldhaploid
Genome composition6 894 978 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 272 · HK 135 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key