1 PAS_9#1
297-401 aa · 105 aa · 9.7% of protein
Raw token
PAS_9:297:0.00000806:401:105:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C47_RS04510
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034126565
ClassHKTypeHybridLength1083 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034126565#U0C47_RS04510Stable P2CS identifier used across views.
GenomeGCF_034126565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_cResponse_reg
Protein length1083 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage510 / 1083 aa (47.1%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1083 aa
Domain-by-domain annotation5 items
2 HisKA#2
552-618 aa · 67 aa · 6.2% of protein
Raw token
HisKA:552:1.47e-17:618:67:643 HATPase_c#3
666-789 aa · 124 aa · 11.4% of protein
Raw token
HATPase_c:666:8.78e-31:789:124:1094 Response_reg#4
812-917 aa · 106 aa · 9.8% of protein
Raw token
Response_reg:812:0.000000000000719:917:106:1115 Response_reg#5
952-1059 aa · 108 aa · 10.0% of protein
Raw token
Response_reg:952:3.83e-24:1059:108:111- Raw architecture: PAS_9:297:0.00000806:401:105:102#HisKA:552:1.47e-17:618:67:64#HATPase_c:666:8.78e-31:789:124:109#Response_reg:812:0.000000000000719:917:106:111#Response_reg:952:3.83e-24:1059:108:111
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034126565::NZ_JAWYSC010000012.1::G00081
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span168082-171333Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126565::NZ_JAWYSC010000012.1::G00081Context members
U0C47_RS04510
Partner locus tags
U0C47_RS04510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117621527.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NYS7Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NYS7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C47_RS04510Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSC010000012.1Sequence record reported by the local genomic context database.
Genomic interval168 082-171 333 nt3 252 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span168 082-171 333 ntGCF_034126565::NZ_JAWYSC010000012.1::G00081
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126565::NZ_JAWYSC010000012.1::G00081Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSC010000012.1All displayed genes belong to this local TCS context.
Neighborhood span168 082-171 333 nt3 252 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
168 082 nt171 333 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0C47_RS04510GCF_034126565#U0C47_RS04510
HKHybridCurrent focus
168 082-171 333 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS32130Use this link to inspect the representative gene detail.
PFAM architecturePAS_9 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0237825
Simplified PFAM architecture for HKOC_0237825
PFAM domain coverage: 521 / 1083 aa (48.1%)
1 aa1083 aa
PAS_9HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_9[297-401] | HisKA[552-618] | HATPase_c[666-789] | Response_reg[812-924] | Response_reg[952-1063]
- Domain count: 5
- Matched identifier: HKOC_0237825
- Positioned domains: PAS_9 297-401 ; HisKA 552-618 ; HATPase_c 666-789 ; Response_reg 812-924 ; Response_reg 952-1063
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS32130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126565
AssemblyASM3412656v1 · Scaffoldhaploid
Genome composition6 894 978 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 272 · HK 135 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key