1 dCache_1#1
177-291 aa · 115 aa · 19.1% of protein
Raw token
dCache_1:177:0.00000000164:291:115:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C47_RS04400
Histidine kinase, Classic
Hungatella effluvii · GCF_034126565
ClassHKTypeClassicLength603 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034126565#U0C47_RS04400Stable P2CS identifier used across views.
GenomeGCF_034126565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length603 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage374 / 603 aa (62.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa603 aa
Domain-by-domain annotation4 items
2 HAMP#2
310-379 aa · 70 aa · 11.6% of protein
Raw token
HAMP:310:0.000000000000279:379:70:693 His_kinase#3
396-475 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:396:5.68e-30:475:80:804 HATPase_c#4
492-600 aa · 109 aa · 18.1% of protein
Raw token
HATPase_c:492:0.0000000294:600:112:109- Raw architecture: dCache_1:177:0.00000000164:291:115:195#HAMP:310:0.000000000000279:379:70:69#His_kinase:396:5.68e-30:475:80:80#HATPase_c:492:0.0000000294:600:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034126565::NZ_JAWYSC010000012.1::G00078
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span137875-141221Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126565::NZ_JAWYSC010000012.1::G00078Context members
U0C47_RS04400U0C47_RS04405
Partner locus tags
U0C47_RS04400U0C47_RS04405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117621512.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NWW6Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NWW6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C47_RS04400Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSC010000012.1Sequence record reported by the local genomic context database.
Genomic interval137 875-139 686 nt1 812 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span137 875-141 221 ntGCF_034126565::NZ_JAWYSC010000012.1::G00078
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126565::NZ_JAWYSC010000012.1::G00078Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSC010000012.1All displayed genes belong to this local TCS context.
Neighborhood span137 875-141 221 nt3 347 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
137 875 nt141 221 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C47_RS04400GCF_034126565#U0C47_RS04400
HKClassicCurrent focus
137 875-139 686 nt · Forward (+)
U0C47_RS04405GCF_034126565#U0C47_RS04405
RRunclassified
139 683-141 221 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS32245Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1038313
Simplified PFAM architecture for HKOC_1038313
PFAM domain coverage: 474 / 603 aa (78.6%)
1 aa603 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[43-279] | HAMP[327-379] | His_kinase[396-473] | HATPase_c[494-599]
- Domain count: 4
- Matched identifier: HKOC_1038313
- Positioned domains: dCache_1 43-279 ; HAMP 327-379 ; His_kinase 396-473 ; HATPase_c 494-599
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS32245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126565
AssemblyASM3412656v1 · Scaffoldhaploid
Genome composition6 894 978 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 272 · HK 135 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key