1 dCache_1#1
123-239 aa · 117 aa · 21.5% of protein
Raw token
dCache_1:123:0.000000299:239:120:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C47_RS02695
Histidine kinase, Classic
Hungatella effluvii · GCF_034126565
ClassHKTypeClassicLength543 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_034126565#U0C47_RS02695Stable P2CS identifier used across views.
GenomeGCF_034126565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length543 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage357 / 543 aa (65.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa543 aa
Domain-by-domain annotation4 items
2 HAMP#2
258-323 aa · 66 aa · 12.2% of protein
Raw token
HAMP:258:0.000000108:323:66:693 His_kinase#3
340-415 aa · 76 aa · 14.0% of protein
Raw token
His_kinase:340:1.84e-25:415:76:804 HATPase_c#4
436-533 aa · 98 aa · 18.0% of protein
Raw token
HATPase_c:436:0.000000000461:533:107:109- Raw architecture: dCache_1:123:0.000000299:239:120:195#HAMP:258:0.000000108:323:66:69#His_kinase:340:1.84e-25:415:76:80#HATPase_c:436:0.000000000461:533:107:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_034126565::NZ_JAWYSC010000011.1::G00024
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span78712-83624Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126565::NZ_JAWYSC010000011.1::G00024Context members
U0C47_RS02685U0C47_RS02690U0C47_RS02695
Partner locus tags
U0C47_RS02685U0C47_RS02690U0C47_RS02695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320959486.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C47_RS02695Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSC010000011.1Sequence record reported by the local genomic context database.
Genomic interval81 993-83 624 nt1 632 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 712-83 624 ntGCF_034126565::NZ_JAWYSC010000011.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126565::NZ_JAWYSC010000011.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSC010000011.1All displayed genes belong to this local TCS context.
Neighborhood span78 712-83 624 nt4 913 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 712 nt83 624 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
U0C47_RS02685GCF_034126565#U0C47_RS02685
HKClassic
78 712-80 226 nt · Reverse (-)
U0C47_RS02690GCF_034126565#U0C47_RS02690
RRunclassified
80 518-82 008 nt · Reverse (-)
U0C47_RS02695GCF_034126565#U0C47_RS02695
HKClassicCurrent focus
81 993-83 624 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS01965Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1088507
Simplified PFAM architecture for HKOC_1088507
PFAM domain coverage: 174 / 594 aa (29.3%)
1 aa594 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[392-467] | HATPase_c[487-584]
- Domain count: 2
- Matched identifier: HKOC_1088507
- Positioned domains: His_kinase 392-467 ; HATPase_c 487-584
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS01965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126565
AssemblyASM3412656v1 · Scaffoldhaploid
Genome composition6 894 978 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 272 · HK 135 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key