1 Response_reg#1
7-115 aa · 109 aa · 21.2% of protein
Raw token
Response_reg:7:2.76e-26:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C47_RS02495
Response regulator, unclassified
Hungatella effluvii · GCF_034126565
ClassRRTypeunclassifiedLength513 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034126565#U0C47_RS02495Stable P2CS identifier used across views.
GenomeGCF_034126565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length513 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage183 / 513 aa (35.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa513 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
422-460 aa · 39 aa · 7.6% of protein
Raw token
HTH_AraC:422:0.00000143:460:39:423 HTH_AraC#3
475-509 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:475:0.000000000517:509:35:42- Raw architecture: Response_reg:7:2.76e-26:115:111:111#HTH_AraC:422:0.00000143:460:39:42#HTH_AraC:475:0.000000000517:509:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034126565::NZ_JAWYSC010000011.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34482-37771Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126565::NZ_JAWYSC010000011.1::G00021Context members
U0C47_RS02495U0C47_RS02500
Partner locus tags
U0C47_RS02495U0C47_RS02500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181987855.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C47_RS02495Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSC010000011.1Sequence record reported by the local genomic context database.
Genomic interval34 482-36 023 nt1 542 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 482-37 771 ntGCF_034126565::NZ_JAWYSC010000011.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126565::NZ_JAWYSC010000011.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSC010000011.1All displayed genes belong to this local TCS context.
Neighborhood span34 482-37 771 nt3 290 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 482 nt37 771 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C47_RS02495GCF_034126565#U0C47_RS02495
RRunclassifiedCurrent focus
34 482-36 023 nt · Reverse (-)
U0C47_RS02500GCF_034126565#U0C47_RS02500
HKClassic
36 056-37 771 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS02180Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0141633
Simplified PFAM architecture for RROC_0141633
PFAM domain coverage: 190 / 513 aa (37.0%)
1 aa513 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-116] | HTH_18[433-511]
- Domain count: 2
- Matched identifier: RROC_0141633
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; HTH_18 433-511 ; HTH_18 433-511
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS02180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126565
AssemblyASM3412656v1 · Scaffoldhaploid
Genome composition6 894 978 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 272 · HK 135 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key